YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAIT_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.89
Transmembrane Helix	14	31	0.95
Non-Cytoplasmic	32	52	0.87
Transmembrane Helix	53	72	0.93
Cytoplasmic	73	90	0.85
Transmembrane Helix	91	110	0.95
Non-Cytoplasmic	111	142	0.92
Transmembrane Helix	143	163	0.92
Cytoplasmic	164	191	0.91
Transmembrane Helix	192	214	0.84
Non-Cytoplasmic	215	230	0.86
Transmembrane Helix	231	251	0.92
Cytoplasmic	252	263	0.84
Transmembrane Helix	264	286	0.91
Non-Cytoplasmic	287	319	0.89
Transmembrane Helix	320	338	0.91
Cytoplasmic	339	346	0.85
Transmembrane Helix	347	367	0.90
Non-Cytoplasmic	368	407	0.93
Transmembrane Helix	408	430	0.91
Cytoplasmic	431	445	0.94
Transmembrane Helix	446	467	0.93
Non-Cytoplasmic	468	474	0.75
Transmembrane Helix	475	495	0.95
Cytoplasmic	496	504	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNEKRKTGI EPKVFFPPLI IVGILCWLTV RDLDAANVVI NAVFSYVTNV WGWAFEWYMV  60
   61 VMLFGWFWLV FGPYAKKRLG NEPPEFSTAS WIFMMFASCT SAAVLFWGSI EIYYYISTPP 120
  121 FGLEPNSTGA KELGLAYSLF HWGPLPWATY SFLSVAFAYF FFVRKMEVIR PSSTLVPLVG 180
  181 EKHAKGLFGT IVDNFYLVAL IFAMGTSLGL ATPLVTECMQ WLFGIPHTLQ LDAIIITCWI 240
  241 ILNAICVACG LQKGVRIASD VRSYLSFLML GWVFIVSGAS FIMNYFTDSV GMLLMYLPRM 300
  301 LFYTDPIAKG GFPQGWTVFY WAWWVIYAIQ MSIFLARISR GRTVRELCFG MVLGLTASTW 360
  361 ILWTVLGSNT LLLIDKNIIN IPNLIEQYGV ARAIIETWAA LPLSTATMWG FFILCFIATV 420
  421 TLVNACSYTL AMSTCREVRD GEEPPLLVRI GWSILVGIIG IVLLALGGLK PIQTAIIAGG 480
  481 CPLFFVNIMV TLSFIKDAKQ NWKD