YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CADB_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.99
Transmembrane Helix	7	30	0.90
Non-Cytoplasmic	31	36	0.81
Transmembrane Helix	37	58	0.92
Cytoplasmic	59	86	0.81
Transmembrane Helix	87	111	0.66
Non-Cytoplasmic	112	118	0.80
Transmembrane Helix	119	140	0.91
Cytoplasmic	141	147	0.78
Transmembrane Helix	148	169	0.93
Non-Cytoplasmic	170	187	0.94
Transmembrane Helix	188	208	0.93
Cytoplasmic	209	219	0.77
Transmembrane Helix	220	242	0.87
Non-Cytoplasmic	243	268	0.74
Transmembrane Helix	269	292	0.80
Cytoplasmic	293	324	0.85
Transmembrane Helix	325	344	0.86
Non-Cytoplasmic	345	349	0.82
Transmembrane Helix	350	371	0.86
Cytoplasmic	372	382	0.74
Transmembrane Helix	383	402	0.95
Non-Cytoplasmic	403	408	0.70
Transmembrane Helix	409	425	0.95
Cytoplasmic	426	444	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAKKIGLF ACTGVVAGNM MGSGIALLPA NLASIGGIAI WGWIISIIGA MSLAYVYARL  60
   61 ATKNPQQGGP IAYAGEISPA FGFQTGVLYY HANWIGNLAI GITAVSYLST FFPVLNDPVP 120
  121 AGIACIAIVW VFTFVNMLGG TWVSRLTTIG LVLVLIPVVM TAIVGWHWFD AATYAANWNT 180
  181 ADTTDGHAII KSILLCLWAF VGVESAAVST GMVKNPKRTV PLATMLGTGL AGIVYIAATQ 240
  241 VLSGMYPSSV MAASGAPFAI SASTILGNWA APLVSAFTAF ACLTSLGSWM MLVGQAGVRA 300
  301 ANDGNFPKVY GEVDSNGIPK KGLLLAAVKM TALMILITLM NSAGGKASDL FGELTGIAVL 360
  361 LTMLPYFYSC VDLIRFEGVN IRNFVSLICS VLGCVFCFIA LMGASSFELA GTFIVSLIIL 420
  421 MFYARKMHER QSHSMDNHTA SNAH