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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CADH2_DANRE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYPSGGVMLG LLAALQVAVQ GTGAMPCQPG FTENEYNVMT ADVITEGQVL LKVDFVDCGR  60
   61 GSGLRFESGD PADFRIDADG TVMAARTLQL TDRKGQSLEI KAKDENSQEQ WMVHINFTQP 120
  121 KQVPVILFPR HSVLVKGDDS VNRVKRDWVI PPVNVLENSR KQFPEELVKI QSDKDKSNTL 180
  181 RYSVTGPGAD QNPTGLFIID PISGLLSVTK PLDREHIPNF HLRAHAVDIN GNQMENPIDI 240
  241 IINVIDMNDN RPEFTHQIWN GTVDEGAKPG TFVMTVTSQD KDDPNTANGM LRYKILSQTP 300
  301 ESPSSNMFTI NNKTGKIITV AAGLDREKVP QYTLIIQATD MEGNPTYGLS NTATAVIRLL 360
  361 DVNDNAPEFT RETFHGEVPE NRVNVIVTNL TVTDKDEPGT PAWNAVYRII SGDPTGRFSI 420
  421 PTDPVTNEGL VTVVKPVDFE MNRSFMLTVV ADNEVPLASG IHRTRQSTAT VSIRVIDVNE 480
  481 SPNFDPNPKQ IKLEEGLPQW SMLTTFTAHD PDRYMQQTIS YSKLYDPANW LEIDPNNGRI 540
  541 STIAVLDRES PYVKNNLYNA TFMASDNGVP RASGTGTLQI YLLDINDNAP RVFPQEAEVC 600
  601 ERPEPNAINI TAVDGDLNPN AGPYAFELPN RPSDIRRNWT LTRISGDHAQ LSLKISYLES 660
  661 GIYELPISIT DSGNLPMSNT TYLRIKVCQC DHHGDCVDME RIMAAGLGTG AIIAILICII 720
  721 ILLVLVLMFV MWMKRRDKER QAKQLLIDPE DDVRDNILKY DEEGGGEEDQ DYDLSQLQQP 780
  781 DTLEPDMIKP VGIRRLDERP MHSEPNYPIR SAAPHPGDIG EFIHEGLKAA DTDPTAPPYD 840
  841 SLLVFDYEGS GSTAGSLSSL HSSSSGGDQD YDYLNDWGPR FRKLADMYGG NDD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle