YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BTUC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.73
Transmembrane Helix	15	35	0.74
Non-Cytoplasmic	36	59	0.88
Transmembrane Helix	60	81	0.91
Cytoplasmic	82	88	0.87
Transmembrane Helix	89	108	0.95
Non-Cytoplasmic	109	114	0.83
Transmembrane Helix	115	136	0.93
Cytoplasmic	137	144	0.91
Transmembrane Helix	145	166	0.96
Non-Cytoplasmic	167	187	0.90
Transmembrane Helix	188	206	0.93
Cytoplasmic	207	218	0.68
Transmembrane Helix	219	235	0.64
Non-Cytoplasmic	236	236	0.45
Transmembrane Helix	237	264	0.80
Cytoplasmic	265	273	0.62
Transmembrane Helix	274	294	0.89
Non-Cytoplasmic	295	299	0.59
Transmembrane Helix	300	322	0.89
Cytoplasmic	323	326	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTLARQQQR QNIRWLLCLS VLMLLALLLS LCAGEQWISP GDWFTPRGEL FVWQIRLPRT  60
   61 LAVLLVGAAL AISGAVMQAL FENPLAEPGL LGVSNGAGVG LIAAVLLGQG QLPNWALGLC 120
  121 AIAGALIITL ILLRFARRHL STSRLLLAGV ALGIICSALM TWAIYFSTSV DLRQLMYWMM 180
  181 GGFGGVDWRQ SWLMLALIPV LLWICCQSRP MNMLALGEIS ARQLGLPLWF WRNVLVAATG 240
  241 WMVGVSVALA GAIGFIGLVI PHILRLCGLT DHRVLLPGCA LAGASALLLA DIVARLALAA 300
  301 AELPIGVVTA TLGAPVFIWL LLKAGR