YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BRNQ_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.97
Transmembrane Helix	10	30	0.93
Non-Cytoplasmic	31	41	0.77
Transmembrane Helix	42	64	0.91
Cytoplasmic	65	76	0.82
Transmembrane Helix	77	99	0.89
Non-Cytoplasmic	100	118	0.92
Transmembrane Helix	119	141	0.89
Cytoplasmic	142	150	0.87
Transmembrane Helix	151	173	0.87
Non-Cytoplasmic	174	193	0.85
Transmembrane Helix	194	213	0.93
Cytoplasmic	214	226	0.83
Transmembrane Helix	227	247	0.95
Non-Cytoplasmic	248	280	0.92
Transmembrane Helix	281	303	0.91
Cytoplasmic	304	313	0.77
Transmembrane Helix	314	334	0.89
Non-Cytoplasmic	335	343	0.59
Transmembrane Helix	344	364	0.87
Cytoplasmic	365	369	0.90
Transmembrane Helix	370	392	0.85
Non-Cytoplasmic	393	408	0.86
Transmembrane Helix	409	430	0.88
Cytoplasmic	431	439	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHQLRSRDI IALGFMTFAL FVGAGNIIFP PMVGLQAGEH VWTAAFGFLI TAVGLPVLTV  60
   61 VALAKVGGGV DSLSTPIGKV AGVLLATVCY LAVGPLFATP RTATVSFEVG IAPLTGDSAL 120
  121 PLFIYSLVYF AIVILVSLYP GKLLDTVGNF LAPLKIIALV ILSVAAIVWP AGSISTATEA 180
  181 YQNAAFSNGF VNGYLTMDTL GAMVFGIVIV NAARSRGVTE ARLLTRYTVW AGLMAGVGLT 240
  241 LLYLALFRLG SDSASLVDQS ANGAAILHAY VQHTFGGGGS FLLAALIFIA CLVTAVGLTC 300
  301 ACAEFFAQYV PLSYRTLVFI LGGFSMVVSN LGLSQLIQIS VPVLTAIYPP CIALVVLSFT 360
  361 RSWWHNSSRV IAPPMFISLL FGILDGIKAS AFSDILPSWA QRLPLAEQGL AWLMPTVVMV 420
  421 VLAIIWDRAA GRQVTSSAH