YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BIRA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDNTVPLKL IALLANGEFH SGEQLGETLG MSRAAINKHI QTLRDWGVDV FTVPGKGYSL  60
   61 PEPIQLLNAK QILGQLDGGS VAVLPVIDST NQYLLDRIGE LKSGDACIAE YQQAGRGRRG 120
  121 RKWFSPFGAN LYLSMFWRLE QGPAAAIGLS LVIGIVMAEV LRKLGADKVR VKWPNDLYLQ 180
  181 DRKLAGILVE LTGKTGDAAQ IVIGAGINMA MRRVEESVVN QGWITLQEAG INLDRNTLAA 240
  241 MLIRELRAAL ELFEQEGLAP YLSRWEKLDN FINRPVKLII GDKEIFGISR GIDKQGALLL 300
  301 EQDGIIKPWM GGEISLRSAE K

Type	Start	End	Confidence
Cytoplasmic	1	122	0.55
Transmembrane Helix	123	137	0.50
Non-Cytoplasmic	138	143	0.77
Transmembrane Helix	144	164	0.66
Cytoplasmic	165	321	0.68