YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BCSA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.66
Transmembrane Helix	28	49	0.92
Cytoplasmic	50	146	0.84
Transmembrane Helix	147	167	0.91
Non-Cytoplasmic	168	172	0.81
Transmembrane Helix	173	190	0.93
Cytoplasmic	191	196	0.83
Transmembrane Helix	197	216	0.94
Non-Cytoplasmic	217	229	0.88
Transmembrane Helix	230	252	0.87
Cytoplasmic	253	521	0.98
Transmembrane Helix	522	546	0.74
Non-Cytoplasmic	547	551	0.54
Transmembrane Helix	552	573	0.85
Cytoplasmic	574	595	0.73
Transmembrane Helix	596	610	0.52
Non-Cytoplasmic	611	637	0.46
Transmembrane Helix	638	659	0.91
Cytoplasmic	660	665	0.47
Transmembrane Helix	666	690	0.87
Non-Cytoplasmic	691	872	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILTRWLLI PPVNARLIGR YRDYRRHGAS AFSATLGCFW MILAWIFIPL EHPRWQRIRA  60
   61 EHKNLYPHIN ASRPRPLDPV RYLIQTCWLL IGASRKETPK PRRRAFSGLQ NIRGRYHQWM 120
  121 NELPERVSHK TQHLDEKKEL GHLSAGARRL ILGIIVTFSL ILALICVTQP FNPLAQFIFL 180
  181 MLLWGVALIV RRMPGRFSAL MLIVLSLTVS CRYIWWRYTS TLNWDDPVSL VCGLILLFAE 240
  241 TYAWIVLVLG YFQVVWPLNR QPVPLPKDMS LWPSVDIFVP TYNEDLNVVK NTIYASLGID 300
  301 WPKDKLNIWI LDDGGREEFR QFAQNVGVKY IARTTHEHAK AGNINNALKY AKGEFVSIFD 360
  361 CDHVPTRSFL QMTMGWFLKE KQLAMMQTPH HFFSPDPFER NLGRFRKTPN EGTLFYGLVQ 420
  421 DGNDMWDATF FCGSCAVIRR KPLDEIGGIA VETVTEDAHT SLRLHRRGYT SAYMRIPQAA 480
  481 GLATESLSAH IGQRIRWARG MVQIFRLDNP LTGKGLKFAQ RLCYVNAMFH FLSGIPRLIF 540
  541 LTAPLAFLLL HAYIIYAPAL MIALFVLPHM IHASLTNSKI QGKYRHSFWS EIYETVLAWY 600
  601 IAPPTLVALI NPHKGKFNVT AKGGLVEEEY VDWVISRPYI FLVLLNLVGV AVGIWRYFYG 660
  661 PPTEMLTVVV SMVWVFYNLI VLGGAVAVSV ESKQVRRSHR VEMTMPAAIA REDGHLFSCT 720
  721 VQDFSDGGLG IKINGQAQIL EGQKVNLLLK RGQQEYVFPT QVARVMGNEV GLKLMPLTTQ 780
  781 QHIDFVQCTF ARADTWALWQ DSYPEDKPLE SLLDILKLGF RGYRHLAEFA PSSVKGIFRV 840
  841 LTSLVSWVVS FIPRRPERSE TAQPSDQALA QQ