YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATOE_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.62
Transmembrane Helix	21	40	0.95
Cytoplasmic	41	52	0.62
Transmembrane Helix	53	75	0.85
Non-Cytoplasmic	76	98	0.68
Transmembrane Helix	99	123	0.82
Cytoplasmic	124	135	0.76
Transmembrane Helix	136	158	0.81
Non-Cytoplasmic	159	180	0.77
Transmembrane Helix	181	201	0.90
Cytoplasmic	202	244	0.91
Transmembrane Helix	245	262	0.93
Non-Cytoplasmic	263	268	0.73
Transmembrane Helix	269	286	0.93
Cytoplasmic	287	297	0.72
Transmembrane Helix	298	320	0.72
Non-Cytoplasmic	321	343	0.67
Transmembrane Helix	344	366	0.71
Cytoplasmic	367	394	0.41
Transmembrane Helix	395	415	0.46
Non-Cytoplasmic	416	417	0.33
Transmembrane Helix	418	439	0.89
Cytoplasmic	440	440	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGRISRFMT RFVSRWLPDP LIFAMLLTLL TFVIALWLTP QTPISMVKMW GDGFWNLLAF  60
   61 GMQMALIIVT GHALASSAPV KSLLRTAASA AKTPVQGVML VTFFGSVACV INWGFGLVVG 120
  121 AMFAREVARR VPGSDYPLLI ACAYIGFLTW GGGFSGSMPL LAATPGNPVE HIAGLIPVGD 180
  181 TLFSGFNIFI TVALIVVMPF ITRMMMPKPS DVVSIDPKLL MEEADFQKQL PKDAPPSERL 240
  241 EESRILTLII GALGIAYLAM YFSEHGFNIT INTVNLMFMI AGLLLHKTPM AYMRAISAAA 300
  301 RSTAGILVQF PFYAGIQLMM EHSGLGGLIT EFFINVANKD TFPVMTFFSS ALINFAVPSG 360
  361 GGHWVIQGPF VIPAAQALGA DLGKSVMAIA YGEQWMNMAQ PFWALPALAI AGLGVRDIMG 420
  421 YCITALLFSG VIFVIGLTLF