YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATKA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.56
Transmembrane Helix	6	25	0.68
Cytoplasmic	26	61	0.62
Transmembrane Helix	62	86	0.84
Non-Cytoplasmic	87	132	0.79
Transmembrane Helix	133	155	0.89
Cytoplasmic	156	172	0.87
Transmembrane Helix	173	191	0.96
Non-Cytoplasmic	192	252	0.92
Transmembrane Helix	253	271	0.95
Cytoplasmic	272	281	0.79
Transmembrane Helix	282	303	0.92
Non-Cytoplasmic	304	326	0.89
Transmembrane Helix	327	348	0.88
Cytoplasmic	349	353	0.68
Transmembrane Helix	354	374	0.79
Non-Cytoplasmic	375	379	0.63
Transmembrane Helix	380	399	0.92
Cytoplasmic	400	415	0.87
Transmembrane Helix	416	437	0.92
Non-Cytoplasmic	438	482	0.84
Transmembrane Helix	483	507	0.87
Cytoplasmic	508	525	0.76
Transmembrane Helix	526	549	0.90
Non-Cytoplasmic	550	557	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQGFLLIA TFLLVLMVLA RPLGSGLARL INDIPLPGTT GVERVLFRAL GVSDREMNWK  60
   61 QYLCAILGLN MLGLAVLFFM LLGQHYLPLN PQQLPGLSWD LALNTAVSFV TNTNWQSYSG 120
  121 ETTLSYFSQM AGLTVQNFLS AASGIAVIFA LIRAFTRQSM STLGNAWVDL LRITLWVLVP 180
  181 VALLIALFFI QQGALQNFLP YQAVNTVEGA QQLLPMGPVA SQEAIKMLGT NGGGFFNANS 240
  241 SHPFENPTAL TNFVQMLAIF LIPTALCFAF GEVMGDRRQG RMLLWAMSVI FVICVGVVMW 300
  301 AEVQGNPHLL ALGTDSSINM EGKESRFGVL VSSLFAVVTT AASCGAVIAM HDSFTALGGM 360
  361 VPMWLMQIGE VVFGGVGSGL YGMMLFVLLA VFIAGLMIGR TPEYLGKKID VREMKLTALA 420
  421 ILVTPTLVLM GAALAMMTDA GRSAMLNPGP HGFSEVLYAV SSAANNNGSA FAGLSANSPF 480
  481 WNCLLAFCMF VGRFGVIIPV MAIAGSLVSK KSQAASSGTL PTHGPLFVGL LIGTVLLVGA 540
  541 LTFIPALALG PVAEYLS