YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMT12_SOLLC
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.47
Transmembrane Helix	12	27	0.42
Non-Cytoplasmic	28	52	0.79
Transmembrane Helix	53	74	0.90
Cytoplasmic	75	86	0.81
Transmembrane Helix	87	108	0.83
Non-Cytoplasmic	109	133	0.86
Transmembrane Helix	134	153	0.93
Cytoplasmic	154	159	0.86
Transmembrane Helix	160	181	0.92
Non-Cytoplasmic	182	201	0.95
Transmembrane Helix	202	225	0.89
Cytoplasmic	226	240	0.94
Transmembrane Helix	241	262	0.91
Non-Cytoplasmic	263	289	0.94
Transmembrane Helix	290	311	0.92
Cytoplasmic	312	319	0.74
Transmembrane Helix	320	339	0.91
Non-Cytoplasmic	340	345	0.74
Transmembrane Helix	346	367	0.93
Cytoplasmic	368	376	0.91
Transmembrane Helix	377	396	0.92
Non-Cytoplasmic	397	425	0.91
Transmembrane Helix	426	449	0.93
Cytoplasmic	450	514	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAMTCSAA ELFPHLGSSA NATAAAEFIC SRFSAVSEYL TNTTYAVDTT YLLFSAYLVF  60
   61 AMQLGFAMLC AGSVRAKNTM NIMLTNVLDA AAGGFSYYLF GFAFAFGAPS NGFIGKHFFG 120
  121 LKEFPSQAFD YSYFLYQWAF AIAAAGITSG SIAERTQFVA YLIYSSFLTG FVYPIVSHWF 180
  181 WSGDGWASAS KTDGNLLLRF GVIDFAGSGV VHMVGGIAGL WGAFIEGPRI GRFDRSGRSV 240
  241 ALRGHSASLV VLGTFLLWFG WYGFNPGSFL TILKSYDHTI RGTYYGQWSA IGRTAVTTTL 300
  301 AGCTAALTTL FCKRLLVAHW NVVDVCNGLL GGFAAITSGC AVVEPWAAIV CGFIAAWVLI 360
  361 GFNALAAKLK YDDPLEAAQL HGGCGSWGII FTGLFAKKEY VNEVYPGFPN RPYGLFMGGG 420
  421 GKLLGAQVIQ VVVIIGWVSV TMGPLFYLLH KFKLLRISRD DETAGMDLTR HGGFAYIYHD 480
  481 EDEGSSMPGF KMTRVEPTNT STPDHQNRSV NVVV