YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARSB_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	42	0.88
Non-Cytoplasmic	43	51	0.74
Transmembrane Helix	52	70	0.93
Cytoplasmic	71	90	0.80
Transmembrane Helix	91	110	0.92
Non-Cytoplasmic	111	114	0.73
Transmembrane Helix	115	137	0.81
Cytoplasmic	138	138	0.50
Transmembrane Helix	139	165	0.72
Non-Cytoplasmic	166	176	0.69
Transmembrane Helix	177	198	0.91
Cytoplasmic	199	221	0.89
Transmembrane Helix	222	241	0.88
Non-Cytoplasmic	242	245	0.72
Transmembrane Helix	246	266	0.87
Cytoplasmic	267	276	0.82
Transmembrane Helix	277	296	0.91
Non-Cytoplasmic	297	315	0.78
Transmembrane Helix	316	335	0.84
Cytoplasmic	336	370	0.54
Transmembrane Helix	371	390	0.60
Non-Cytoplasmic	391	400	0.39
Transmembrane Helix	401	427	0.81
Cytoplasmic	428	429	0.38

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLAGAIFVL TIVLVIWQPK GLGIGWSATL GAVLALVTGV VHPGDIPVVW NIVWNATAAF  60
   61 IAVIIISLLL DESGFFEWAA LHVSRWGNGR GRLLFTWIVL LGAAVAALFA NDGAALILTP 120
  121 IVIAMLLALG FSKGTTLAFV MAAGFIADTA SLPLIVSNLV NIVSADFFGL GFREYASVMV 180
  181 PVDIAAIVAT LVMLHLYFRK DIPQNYDMAL LKSPAEAIKD PATFKTGWVV LLLLLVGFFV 240
  241 LEPLGIPVSA IAAVGALILF VVAKRGHAIN TGKVLRGAPW QIVIFSLGMY LVVYGLRNAG 300
  301 LTEYLSGVLN VLADNGLWAA TLGTGFLTAF LSSIMNNMPT VLVGALSIDG STASGVIKEA 360
  361 MVYANVIGCD LGPKITPIGS LATLLWLHVL SQKNMTISWG YYFRTGIIMT LPVLFVTLAA 420
  421 LALRLSFTL