YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARAJ_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.81
Transmembrane Helix	8	27	0.88
Non-Cytoplasmic	28	42	0.71
Transmembrane Helix	43	61	0.96
Cytoplasmic	62	69	0.80
Transmembrane Helix	70	89	0.94
Non-Cytoplasmic	90	98	0.56
Transmembrane Helix	99	120	0.85
Cytoplasmic	121	126	0.83
Transmembrane Helix	127	149	0.90
Non-Cytoplasmic	150	157	0.83
Transmembrane Helix	158	179	0.94
Cytoplasmic	180	198	0.95
Transmembrane Helix	199	220	0.93
Non-Cytoplasmic	221	234	0.78
Transmembrane Helix	235	254	0.91
Cytoplasmic	255	264	0.81
Transmembrane Helix	265	286	0.91
Non-Cytoplasmic	287	292	0.83
Transmembrane Helix	293	315	0.94
Cytoplasmic	316	325	0.84
Transmembrane Helix	326	348	0.84
Non-Cytoplasmic	349	355	0.65
Transmembrane Helix	356	376	0.92
Cytoplasmic	377	394	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVILSLAL GTFGLGMAEF GIMGVLTELA HNVGISIPAA GHMISYYALG VVVGAPIIAL  60
   61 FSSRYSLKHI LLFLVALCVI GNAMFTLSSS YLMLAIGRLV SGFPHGAFFG VGAIVLSKII 120
  121 KPGKVTAAVA GMVSGMTVAN LLGIPLGTYL SQEFSWRYTF LLIAVFNIAV MASVYFWVPD 180
  181 IRDEAKGNLR EQFHFLRSPA PWLIFAATMF GNAGVFAWFS YVKPYMMFIS GFSETAMTFI 240
  241 MMLVGLGMVL GNMLSGRISG RYSPLRIAAV TDFIIVLALL MLFFCGGMKT TSLIFAFICC 300
  301 AGLFALSAPL QILLLQNAKG GELLGAAGGQ IAFNLGSAVG AYCGGMMLTL GLAYNYVALP 360
  361 AALLSFAAMS SLLLYGRYKR QQAADTPVLA KPLG