YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APPC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.94
Transmembrane Helix	17	41	0.86
Cytoplasmic	42	53	0.91
Transmembrane Helix	54	75	0.89
Non-Cytoplasmic	76	95	0.85
Transmembrane Helix	96	118	0.91
Cytoplasmic	119	126	0.90
Transmembrane Helix	127	147	0.94
Non-Cytoplasmic	148	185	0.96
Transmembrane Helix	186	208	0.92
Cytoplasmic	209	214	0.95
Transmembrane Helix	215	237	0.88
Non-Cytoplasmic	238	387	0.97
Transmembrane Helix	388	409	0.93
Cytoplasmic	410	420	0.86
Transmembrane Helix	421	442	0.88
Non-Cytoplasmic	443	468	0.87
Transmembrane Helix	469	488	0.92
Cytoplasmic	489	514	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWDVIDLSRW QFALTALYHF LFVPLTLGLI FLLAIMETIY VVTGKTIYRD MTRFWGKLFG  60
   61 INFALGVATG LTMEFQFGTN WSFYSNYVGD IFGAPLAMEA LMAFFLESTF VGLFFFGWQR 120
  121 LNKYQHLLVT WLVAFGSNLS ALWILNANGW MQYPTGAHFD IDTLRMEMTS FSELVFNPVS 180
  181 QVKFVHTVMA GYVTGAMFIM AISAWYLLRG RERNVALRSF AIGSVFGTLA IIGTLQLGDS 240
  241 SAYEVAQVQP VKLAAMEGEW QTEPAPAPFH VVAWPEQDQE RNAFALKIPA LLGILATHSL 300
  301 DKPVPGLKNL MAETYPRLQR GRMAWLLMQE ISQGNREPHV LQAFRGLEGD LGYGMLLSRY 360
  361 APDMNHVTAA QYQAAMRGAI PQVAPVFWSF RIMVGCGSLL LLVMLIALVQ TLRGKIDQHR 420
  421 WVLKMALWSL PLPWIAIEAG WFMTEFGRQP WAIQDILPTY SAHSALTTGQ LAFSLIMIVG 480
  481 LYTLFLIAEV YLMQKYARLG PSAMQSEQPT QQQG