YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APPB_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDYETLRFI WWLLIGVILV VFMISDGFDM GIGCLLPLVA RNDDERRIVI NSVGAHWEGN  60
   61 QVWLILAGGA LFAAWPRVYA AAFSGFYVAM ILVLCSLFFR PLAFDYRGKI ADARWRKMWD 120
  121 AGLVIGSLVP PVVFGIAFGN LLLGVPFAFT PQLRVEYLGS FWQLLTPFPL LCGLLSLGMV 180
  181 ILQGGVWLQL KTVGVIHLRS QLATKRAALL VMLCFLLAGY WLWVGIDGFV LLAQDANGPS 240
  241 NPLMKLVAVL PGAWMNNFVE SPVLWIFPLL GFFCPLLTVM AIYRGRPGWG FLMASLMQFG 300
  301 VIFTAGITLF PFVMPSSVSP ISSLTLWDST SSQLTLSIML VIVLIFLPIV LLYTLWSYYK 360
  361 MWGRMTTETL RRNENELY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.49
Transmembrane Helix	9	30	0.88
Non-Cytoplasmic	31	79	0.53
Transmembrane Helix	80	102	0.88
Cytoplasmic	103	120	0.90
Transmembrane Helix	121	143	0.91
Non-Cytoplasmic	144	164	0.88
Transmembrane Helix	165	187	0.91
Cytoplasmic	188	206	0.85
Transmembrane Helix	207	224	0.95
Non-Cytoplasmic	225	262	0.90
Transmembrane Helix	263	283	0.94
Cytoplasmic	284	290	0.83
Transmembrane Helix	291	314	0.87
Non-Cytoplasmic	315	333	0.92
Transmembrane Helix	334	356	0.94
Cytoplasmic	357	378	0.96