YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APH1A_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAAVFFGCT FVAFGPAFSL FLITVAGDPL RVIILVAGAF FWLVSLLLAS VVWFILVHVT  60
   61 DRSDARLQYG LLIFGAAVSV LLQEVFRFAY YKLLKKADEG LASLSEDGRS PISIRQMAYV 120
  121 SGLSFGIISG VFSVINILAD ALGPGVVGIH GDSPYYFLTS AFLTAAIILL HTFWGVVFFD 180
  181 ACERRRYWAL GLVVGSHLLT SGLTFLNPWY EASLLPIYAV TVSMGLWAFI TAGGSLRSIQ 240
  241 RSLSCRRQED SRVMVYSALR IPPED

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.81
Transmembrane Helix	5	26	0.91
Cytoplasmic	27	32	0.76
Transmembrane Helix	33	57	0.89
Non-Cytoplasmic	58	66	0.77
Transmembrane Helix	67	86	0.83
Cytoplasmic	87	117	0.92
Transmembrane Helix	118	139	0.92
Non-Cytoplasmic	140	155	0.87
Transmembrane Helix	156	178	0.92
Cytoplasmic	179	186	0.90
Transmembrane Helix	187	206	0.96
Non-Cytoplasmic	207	213	0.79
Transmembrane Helix	214	236	0.90
Cytoplasmic	237	265	0.96