YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.89
Transmembrane Helix	25	46	0.89
Cytoplasmic	47	56	0.85
Transmembrane Helix	57	79	0.92
Non-Cytoplasmic	80	119	0.96
Transmembrane Helix	120	141	0.91
Cytoplasmic	142	150	0.75
Transmembrane Helix	151	169	0.93
Non-Cytoplasmic	170	183	0.74
Transmembrane Helix	184	203	0.96
Cytoplasmic	204	212	0.94
Transmembrane Helix	213	233	0.88
Non-Cytoplasmic	234	244	0.67
Transmembrane Helix	245	265	0.86
Cytoplasmic	266	271	0.68
Transmembrane Helix	272	293	0.83
Non-Cytoplasmic	294	300	0.61
Transmembrane Helix	301	322	0.89
Cytoplasmic	323	337	0.88
Transmembrane Helix	338	358	0.94
Non-Cytoplasmic	359	387	0.91
Transmembrane Helix	388	409	0.90
Cytoplasmic	410	475	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAYDPSLP EVPEWLNKGD NAWQLTAATL VGLQSMPGLV ILYASIVKKK WAVNSAFMAL  60
   61 YAFAAVLLCW VLLCYKMAFG EELLPFWGKG GPAFDQGYLK GQAKIPNSNV AAPYFPMATL 120
  121 VYFQFTFAAI TTILVAGSVL GRMNIKAWMA FVPLWLIFSY TVGAYSIWGG GFLYQWGVID 180
  181 YSGGYVIHLS SGVAGFVAAY WVGPRPKADR ERFPPNNVLL MLAGAGLLWM GWSGFNGGAP 240
  241 YAANLTSSIA VLNTNLSAAT SLLVWTTLDV IFFGKPSVIG AIQGMVTGLA GVTPGAGLIQ 300
  301 TWAAIIIGVV SGTAPWASMM IIHKKSALLQ KVDDTLAVFY THAVAGLLGG IMTGLFAHPD 360
  361 LCVLVLPLPA TRGAFYGGNG GKQLLKQLAG AAFIAVWNVV STTIILLAIR VFIPLRMAEE 420
  421 ELGIGDDAAH GEEAYALWGD GEKFDATRHV QQFERDQEAA HPSYVHGARG VTIVL