YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMPE_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLFTTLLVL IFERLFKLGE HWQLDHRLEA FFRRVKHFSL GRTLGMTIIA MGVTFLLLRA  60
   61 LQGVLFNVPT LLVWLLIGLL CIGAGKVRLH YHAYLTAASR NDSHARATMA GELTMIHGVP 120
  121 AGCDEREYLR ELQNALLWIN FRFYLAPLFW LIVGGTWGPV TLMGYAFLRA WQYWLARYQT 180
  181 PHHRLQSGID AVLHVLDWVP VRLAGVVYAL IGHGEKALPA WFASLGDFHT SQYQVLTRLA 240
  241 QFSLAREPHV DKVETPKAAV SMAKKTSFVV VVVIALLTIY GALV

Type	Start	End	Confidence
Cytoplasmic	1	39	0.95
Transmembrane Helix	40	61	0.90
Non-Cytoplasmic	62	69	0.67
Transmembrane Helix	70	90	0.87
Cytoplasmic	91	145	0.84
Transmembrane Helix	146	168	0.87
Non-Cytoplasmic	169	193	0.76
Transmembrane Helix	194	212	0.67
Cytoplasmic	213	265	0.85
Transmembrane Helix	266	283	0.88
Non-Cytoplasmic	284	284	0.90