YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALX_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.89
Transmembrane Helix	8	27	0.97
Cytoplasmic	28	41	0.89
Transmembrane Helix	42	63	0.92
Non-Cytoplasmic	64	83	0.90
Transmembrane Helix	84	106	0.83
Cytoplasmic	107	113	0.86
Transmembrane Helix	114	135	0.92
Non-Cytoplasmic	136	141	0.78
Transmembrane Helix	142	161	0.94
Cytoplasmic	162	198	0.97
Transmembrane Helix	199	220	0.88
Non-Cytoplasmic	221	234	0.66
Transmembrane Helix	235	253	0.91
Cytoplasmic	254	263	0.79
Transmembrane Helix	264	283	0.94
Non-Cytoplasmic	284	289	0.79
Transmembrane Helix	290	311	0.94
Cytoplasmic	312	321	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTVGTPLLW GGFAVVVAIM LAIDLLLQGR RGAHAMTMKQ AAAWSLVWVT LSLLFNAAFW  60
   61 WYLVQTEGRA VADPQALAFL TGYLIEKSLA VDNVFVWLML FSYFSVPAAL QRRVLVYGVL 120
  121 GAIVLRTIMI FTGSWLISQF DWILYIFGAF LLFTGVKMAL AHEDESGIGD KPLVRWLRGH 180
  181 LRMTDTIDNE HFFVRKNGLL YATPLMLVLI LVELSDVIFA VDSIPAIFAV TTDPFIVLTS 240
  241 NLFAILGLRA MYFLLAGVAE RFSMLKYGLA VILVFIGIKM LIVDFYHIPI AVSLGVVFGI 300
  301 LVMTFIINAW VNYRHDKQRG G