YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALSC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFTTRVKSE ASEKKPFNFA LFWDKYGTFF ILAIIVAIFG SLSPEYFLTT NNITQIFVQS  60
   61 SVTVLIGMGE FFAILVAGID LSVGAILALS GMVTAKLMLA GVDPFLAAMI GGVLVGGALG 120
  121 AINGCLVNWT GLHPFIITLG TNAIFRGITL VISDANSVYG FSFDFVNFFA ASVIGIPVPV 180
  181 IFSLIVALIL WFLTTRMRLG RNIYALGGNK NSAFYSGIDV KFHILVVFII SGVCAGLAGV 240
  241 VSTARLGAAE PLAGMGFETY AIASAIIGGT SFFGGKGRIF SVVIGGLIIG TINNGLNILQ 300
  301 VQTYYQLVVM GGLIIAAVAL DRLISK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	42	0.88
Non-Cytoplasmic	43	63	0.64
Transmembrane Helix	64	94	0.75
Cytoplasmic	95	104	0.44
Transmembrane Helix	105	127	0.88
Non-Cytoplasmic	128	168	0.61
Transmembrane Helix	169	193	0.91
Cytoplasmic	194	221	0.88
Transmembrane Helix	222	244	0.90
Non-Cytoplasmic	245	251	0.69
Transmembrane Helix	252	273	0.83
Cytoplasmic	274	278	0.71
Transmembrane Helix	279	298	0.86
Non-Cytoplasmic	299	303	0.72
Transmembrane Helix	304	324	0.90
Cytoplasmic	325	326	0.78