YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ADT1_MAIZE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADQANQPTV LHKLGGQFHL RSIISEGVRA RNICPSVSSY ERRFATRNYM TQSLWGPSMS  60
   61 VSGGINVPVM QTPLCANAPA EKGGKNFMID FMMGGVSAAV SKTAAAPIER VKLLIQNQDE 120
  121 MIKSGRLSEP YKGIVDCFKR TIKDEGFSSL WRGNTANVIR YFPTQALNFA FKDYFKRLFN 180
  181 FKKDRDGYWK WFAGNLASGG AAGASSLFFV YSLDYARTRL ANDAKAAKGG GERQFNGLVD 240
  241 VYRKTLKSDG IAGLYRGFNI SCVGIIVYRG LYFGLYDSIK PVVLTGNLQD NFFASFALGW 300
  301 LITNGAGLAS YPIDTVRRRM MMTSGEAVKY KSSLDAFQQI LKKEGPKSLF KGAGANILRA 360
  361 IAGAGVLSGY DQLQILFFGK KYGSGGA

Type	Start	End	Confidence
Cytoplasmic	1	251	0.54
Transmembrane Helix	252	272	0.76
Non-Cytoplasmic	273	291	0.92
Transmembrane Helix	292	313	0.92
Cytoplasmic	314	387	0.76