YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ADIC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.92
Transmembrane Helix	10	33	0.89
Non-Cytoplasmic	34	40	0.75
Transmembrane Helix	41	61	0.93
Cytoplasmic	62	90	0.87
Transmembrane Helix	91	115	0.86
Non-Cytoplasmic	116	122	0.79
Transmembrane Helix	123	143	0.95
Cytoplasmic	144	151	0.83
Transmembrane Helix	152	173	0.94
Non-Cytoplasmic	174	189	0.74
Transmembrane Helix	190	212	0.73
Cytoplasmic	213	225	0.73
Transmembrane Helix	226	250	0.87
Non-Cytoplasmic	251	273	0.86
Transmembrane Helix	274	296	0.92
Cytoplasmic	297	319	0.85
Transmembrane Helix	320	339	0.93
Non-Cytoplasmic	340	352	0.77
Transmembrane Helix	353	376	0.87
Cytoplasmic	377	384	0.80
Transmembrane Helix	385	404	0.93
Non-Cytoplasmic	405	409	0.83
Transmembrane Helix	410	428	0.90
Cytoplasmic	429	445	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDADAHKV GLIPVTLMVS GNIMGSGVFL LPANLASTGG IAIYGWLVTI IGALGLSMVY  60
   61 AKMSFLDPSP GGSYAYARRC FGPFLGYQTN VLYWLACWIG NIAMVVIGVG YLSYFFPILK 120
  121 DPLVLTITCV VVLWIFVLLN IVGPKMITRV QAVATVLALI PIVGIAVFGW FWFRGETYMA 180
  181 AWNVSGLGTF GAIQSTLNVT LWSFIGVESA SVAAGVVKNP KRNVPIATIG GVLIAAVCYV 240
  241 LSTTAIMGMI PNAALRVSAS PFGDAARMAL GDTAGAIVSF CAAAGCLGSL GGWTLLAGQT 300
  301 AKAAADDGLF PPIFARVNKA GTPVAGLIIV GILMTIFQLS SISPNATKEF GLVSSVSVIF 360
  361 TLVPYLYTCA ALLLLGHGHF GKARPAYLAV TTIAFLYCIW AVVGSGAKEV MWSFVTLMVI 420
  421 TAMYALNYNR LHKNPYPLDA PISKD