YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACRD_ECOLI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.82
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	339	0.98
Transmembrane Helix	340	359	0.91
Cytoplasmic	360	365	0.82
Transmembrane Helix	366	387	0.92
Non-Cytoplasmic	388	392	0.81
Transmembrane Helix	393	413	0.89
Cytoplasmic	414	437	0.89
Transmembrane Helix	438	459	0.92
Non-Cytoplasmic	460	471	0.76
Transmembrane Helix	472	494	0.91
Cytoplasmic	495	539	0.93
Transmembrane Helix	540	558	0.94
Non-Cytoplasmic	559	870	0.95
Transmembrane Helix	871	890	0.94
Cytoplasmic	891	896	0.77
Transmembrane Helix	897	916	0.94
Non-Cytoplasmic	917	922	0.80
Transmembrane Helix	923	944	0.85
Cytoplasmic	945	971	0.90
Transmembrane Helix	972	992	0.90
Non-Cytoplasmic	993	1003	0.73
Transmembrane Helix	1004	1026	0.92
Cytoplasmic	1027	1037	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANFFIDRPI FAWVLAILLC LTGTLAIFSL PVEQYPDLAP PNVRVTANYP GASAQTLENT  60
   61 VTQVIEQNMT GLDNLMYMSS QSSGTGQASV TLSFKAGTDP DEAVQQVQNQ LQSAMRKLPQ 120
  121 AVQNQGVTVR KTGDTNILTI AFVSTDGSMD KQDIADYVAS NIQDPLSRVN GVGDIDAYGS 180
  181 QYSMRIWLDP AKLNSFQMTA KDVTDAIESQ NAQIAVGQLG GTPSVDKQAL NATINAQSLL 240
  241 QTPEQFRDIT LRVNQDGSEV RLGDVATVEM GAEKYDYLSR FNGKPASGLG VKLASGANEM 300
  301 ATAELVLNRL DELAQYFPHG LEYKVAYETT SFVKASIEDV VKTLLEAIAL VFLVMYLFLQ 360
  361 NFRATLIPTI AVPVVLMGTF SVLYAFGYSV NTLTMFAMVL AIGLLVDDAI VVVENVERIM 420
  421 SEEGLTPREA TRKSMGQIQG ALVGIAMVLS AVFVPMAFFG GTTGAIYRQF SITIVAAMVL 480
  481 SVLVAMILTP ALCATLLKPL KKGEHHGQKG FFAWFNQMFN RNAERYEKGV AKILHRSLRW 540
  541 IVIYVLLLGG MVFLFLRLPT SFLPLEDRGM FTTSVQLPSG STQQQTLKVV EQIEKYYFTH 600
  601 EKDNIMSVFA TVGSGPGGNG QNVARMFIRL KDWSERDSKT GTSFAIIERA TKAFNQIKEA 660
  661 RVIASSPPAI SGLGSSAGFD MELQDHAGAG HDALMAARNQ LLALAAENPE LTRVRHNGLD 720
  721 DSPQLQIDID QRKAQALGVA IDDINDTLQT AWGSSYVNDF MDRGRVKKVY VQAAAPYRML 780
  781 PDDINLWYVR NKDGGMVPFS AFATSRWETG SPRLERYNGY SAVEIVGEAA PGVSTGTAMD 840
  841 IMESLVKQLP NGFGLEWTAM SYQERLSGAQ APALYAISLL VVFLCLAALY ESWSVPFSVM 900
  901 LVVPLGVIGA LLATWMRGLE NDVYFQVGLL TVIGLSAKNA ILIVEFANEM NQKGHDLFEA 960
  961 TLHACRQRLR PILMTSLAFI FGVLPMATST GAGSGGQHAV GTGVMGGMIS ATILAIYFVP1020
 1021 LFFVLVRRRF PLKPRPE