YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACHA_DANRE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.42
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYFILILPI LPYLYGPAVC SEDETRLVKT LFTGYNKVVR PVSHFKDPVV VTVGLQLIQL  60
   61 ISVDEVNQIV TSNVRLKQQW KDVHLQWNPD DYGGIRKIRI PSTDLWKPDL VLYNNADGDF 120
  121 AIVHETKVLL EHTGMITWTP PAIFKSYCEI VVLHFPFDLQ NCSMKLGTWT YDGNLVIINP 180
  181 DSDRPDLSNF MESGEWVMKD YRSWKHWVYY ACCPDTPYLD ITYHFLLLRL PLYFIVNVII 240
  241 PCMLFSFLTG LVFYLPTDSG EKMTLSISVL LSLTVFLLVI VELIPSTSSA VPLIGKYMLF 300
  301 TMIFVIASII ITVIVINTHH RSPSTHIMPA WVRKIFIDTI PNMMFFSTMK RPSQERQEKR 360
  361 LFPADFDISD ISGKPMPASV TYHSPITKNP DVRSAIEGVK YIADTMKSDE ESNNAAEEWK 420
  421 FVAMVLDHIL LCVFMAVCII GTLGVFAGRL IELSML

Type	Start	End	Confidence
Signal Peptide	1	20	0.42
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	232	0.70
Transmembrane Helix	233	255	0.94
Cytoplasmic	256	263	0.71
Transmembrane Helix	264	285	0.91
Non-Cytoplasmic	286	296	0.61
Transmembrane Helix	297	318	0.92
Cytoplasmic	319	427	0.83
Transmembrane Helix	428	448	0.94
Non-Cytoplasmic	449	456	0.71