YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ABRB_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.44
Transmembrane Helix	8	41	0.73
Cytoplasmic	42	51	0.43
Transmembrane Helix	52	74	0.82
Non-Cytoplasmic	75	80	0.41
Transmembrane Helix	81	103	0.91
Cytoplasmic	104	111	0.48
Transmembrane Helix	112	134	0.74
Non-Cytoplasmic	135	141	0.39
Transmembrane Helix	142	163	0.88
Cytoplasmic	164	173	0.44
Transmembrane Helix	174	203	0.75
Non-Cytoplasmic	204	210	0.37
Transmembrane Helix	211	245	0.66
Cytoplasmic	246	261	0.64
Transmembrane Helix	262	281	0.95
Non-Cytoplasmic	282	316	0.51
Transmembrane Helix	317	341	0.71
Cytoplasmic	342	348	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVLQWGMLC VLSLLLSIGF LAVHLPAALL LGPMIAGIIF SMRGITLQLP RSAFLAAQAI  60
   61 LGCMIAQNLT GSILTTLAVN WPIVLAILLV TLLSSAIVGW LLVRYSSLPG NTGAWGSSPG 120
  121 GAAAMVAMAQ DYGADIRLVA FMQYLRVLFV AGAAVLVTRM MLGDNAEAVN QHIVWFPPVS 180
  181 INLLLTILLA VVAGTVGCLL RLPSGTMLIP MLAGAVLQSG QLITIELPEW LLAMAYMAIG 240
  241 WRIGLGFDKQ ILLRALRPLP QILLSIFALL AICAGMAWGL TRFMHIDFMT AYLATSPGGL 300
  301 DTVAVIAAGS NADMALIMAM QTLRLFSILL TGPAIARFIS TYAPKRSA