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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AT1A3_CHICK
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDKGEKESP KKGKGKRDLD DLKKEVAMTE HKMSIEEVCR KYNTDCVQGL THSKAQEILA  60
   61 RDGPNALTPP PTTPEWVKFC RQLFGGFSIL LWIGAILCFL AYGIQAGTED EPSNDNLYLG 120
  121 IVLAAVVIIT GCFSYYQEAK SSKIMESFKN MVPQQALVIR EGEKMQLNAE EVVVGDLVEV 180
  181 KGGDRVPADL RIISAHGCKV DNSSLTGESE PQTRSPDCTH DNPLETRNIT FFSTNCVEGT 240
  241 ARGVVIATGD RTVMGRIATL ASGLEVGKTP IAVEIEHFIQ LITGVAVFLG ISFFVLSLIL 300
  301 GYTWLEAVIF LIGIIVANVP EGLLATVTVC LTLTAKRMAR KNCLVKNLEA VETLGSTSTI 360
  361 CSDKTGTLTQ NRMTVAHMWF DNQIHEADTT EDQSGTSFDK SSATWVALSH IAGLCNRAVF 420
  421 KGGQENVPIL KRDVAGDASE SALLKCIELS SGSVKVMRER NKKVAEIPFN STNKYQLSIH 480
  481 ETEDPNDNRY LLVMKGAPER ILDRCSTILL QGKEQPLDEE MKEAFQNAYL ELGGLGERVL 540
  541 GFCHFYLPEE QYPKGFAFDC DDVNFATDNL CFVGLMSMID PPRAAVPDAV GKCRSAGIKV 600
  601 IMVTGDHPIT AKAIAKGVGI ISEGNETVED IAARLNIPVS QVNPRDAKAC VIHGTDLKDM 660
  661 SSEQIDEILQ NHTEIVFART SPQQKLIIVE GCQRQGAIVA VTGDGVNDSP ALKKADIGVA 720
  721 MGIRGSDVSK QAADMILLDD NFASIVTGVE EGRLIFDNLK KSIAYTLTSN IPEITPFLLF 780
  781 IMANIPLPLG TITILCIDLG TDMVPAISLA YEAAESDIMK RQPRNPRSDK LVNERLISMA 840
  841 YGQIGMIQAL GGFFSYFVIL AENGFLPSCL VGIRLSWDDR TINDLEDSYG QQWTYEQRKV 900
  901 VEFTCHTAFF VSIVVVQWAD LIICKTRRNS VFQQGMKNKI LIFGLFEETA LAAFLSYCPG 960
  961 MDVALRMYPL KPSWWFCAFP YSFLIFVYDE IRKLILRRNP GGWVEKETYY 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle