YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5NTD_BOVIN
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPGAARTPA LRILPLGALL WPAARPWELT ILHTNDVHSR LEQTSEDSSK CVNASRCVGG  60
   61 VARLATKVHQ IRRAEPHVLL LDAGDQYQGT IWFTVYKGTE VAHFMNALGY ESMALGNHEF 120
  121 DNGVEGLIDP LLKEVNFPIL SANIKAKGPL ASKISGLYSP YKILTVGDEV VGIVGYTSKE 180
  181 TPFLSNPGTN LVFEDEITAL QPEVDKLKTL NVNKIIALGH SGFEVDKLIA QKVKGVDVVV 240
  241 GGHSNTFLYT GNPPSKEVPA GQYPFIVTSD DGRKVPVVQA YAFGKYLGYL KVEFDEKGNV 300
  301 VTSHGNPILL NSSIPEDPNI KADINKWRVK LDNYSTQELG KTIVYLDGTA QSCRFRECNM 360
  361 GNLICDAMIN NNLRHPDEMS WNHVSMCILN GGGIRSPIDE RNNGTITWEN LAAVLPFGGT 420
  421 FDLVQLKGST LKKAFDDTVH RYGQRTGEFL QVGGIHVVYD ISRNPGDRVV KLEVLCTQCR 480
  481 VPSYEPLRMD KVYKVILPSF LVSGGDGFQM IKDEKIKHDS GDQDINVVSG YISKMKVLYP 540
  541 AVEGRIQFSA GSHCCGSFSL IFLSVLAVII ILYQ

Type	Start	End	Confidence
Signal Peptide	1	26	0.89
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	549	0.98
Transmembrane Helix	550	573	0.84
Cytoplasmic	574	574	0.87