YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE36347
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGCVSQAAP SEPWLQNVSI VGVKQIDRIV EVVGETLKGN KVRLLTRNRP DAVLSLPKMR  60
   61 KNELIEVLSI STGCLNNCTY CKTKMARGDL VSYPLADLVE QARAAFHDEG VKELWLTSED 120
  121 LGAWGRDIGL VLPDLLRELV KVIPDGSMMR LGMTNPPYIL DHLEEIAEIL NHPKVYAFLH 180
  181 IPVQSASDAV LNDMKREYSR RHFEQIADYM IANVPNIYIA TDMILAFPTE TLEDFEESME 240
  241 LVRKYKFPSL FINQYYPRSG TPAARLKKID TVEARKRTAA MSELFRSYTR YTDERIGELH 300
  301 RVLVTEVAAD KLHGVGHNKS YEQILVPLEY CKMGEWIEVR VTAVTKFSMI SKPASIQEDQ 360
  361 QPLSLMHLFP LAVFCLVLIT LYSVDRFLYP GFFEEWLPFL ADAHHDEQQA EMWEHHDNSD 420
  421 PVFYE

Type	Start	End	Confidence
Non-Cytoplasmic	1	364	0.92
Transmembrane Helix	365	384	0.88
Cytoplasmic	385	425	0.83