YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-52
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISPPPPPGN GEFHVIIALF IETILMSARI HDVTYQHIED FTCDDIGLSS LSGAKATDLA  60
   61 RILMTNYSRN ALPEPAPVKV EVEITIQDIS DISAITGTFT IDYWISAIWN DKRLAFSHLD 120
  121 PCRKNLSLDH DMEPKLWSPN VCIVNSKSTK VHDSPKPNIL LMIFPNGTIW LNYRIRSEAP 180
  181 CQMNLRNFPL DSIRCSLVFE SYSYNAADVE LQWLEWSPVS TVRNDYNLPD FRMTNITYGS 240
  241 VTEAYTAGMW HRLSVSIHFE RLYGFYILQM YLPTYISVFI SWIAFWMDTK ALPARITLSV 300
  301 SSLMALTFQF GNIVKSLPKA SYVKAIDIWM FSCVGFIFFS LIELAIVAYN DKMHDQRLRE 360
  361 VRCSVGNLNS NGIGQYNSTT RRSFVELSAR RAKGSELGAS IDRVASMLFP TMFALFNLVY 420
  421 WAYYLTTSMN PVYT

Type	Start	End	Confidence
Non-Cytoplasmic	1	261	0.67
Transmembrane Helix	262	286	0.88
Cytoplasmic	287	291	0.68
Transmembrane Helix	292	313	0.82
Non-Cytoplasmic	314	327	0.65
Transmembrane Helix	328	349	0.93
Cytoplasmic	350	403	0.76
Transmembrane Helix	404	424	0.89
Non-Cytoplasmic	425	434	0.75