YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fpn-1.1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.77
Transmembrane Helix	14	34	0.78
Non-Cytoplasmic	35	41	0.58
Transmembrane Helix	42	64	0.72
Cytoplasmic	65	76	0.85
Transmembrane Helix	77	96	0.94
Non-Cytoplasmic	97	101	0.85
Transmembrane Helix	102	121	0.75
Cytoplasmic	122	239	0.69
Transmembrane Helix	240	261	0.86
Non-Cytoplasmic	262	273	0.75
Transmembrane Helix	274	294	0.90
Cytoplasmic	295	301	0.74
Transmembrane Helix	302	325	0.84
Non-Cytoplasmic	326	367	0.90
Transmembrane Helix	368	387	0.91
Cytoplasmic	388	407	0.89
Transmembrane Helix	408	428	0.55
Non-Cytoplasmic	429	435	0.44
Transmembrane Helix	436	458	0.84
Cytoplasmic	459	509	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWLSGKELQ LNSAFLLTTL GDRMWAFVIG LFMHQLGGMT WVAVQQLVDS VLKLVVITIV  60
   61 GQYLDKIDRS KIIQRTLLLN NAAVAVSAGL FAYMFVHKTD HYATPVLLMA SAVASIAKVA 120
  121 SEIQRISFTK DWVVVISQSE SVDLAKVNSI LLCIDQISSA ILPTLTGELL DTFKWQYVCG 180
  181 FIIVYNLASW VIESMILRRL YNETPQLKTR ASEITGDEEL RGLKGVKLNS ITQYFKQQSW 240
  241 TAGFGLSLLY MTVLGFDNLA ASYGQKHGLS ASYIGVLRGF GSALGVIGTF SFQFVAKRFG 300
  301 LLWTVMIGLV WQNIFIEMCG VSVLLPGSSM DVSGYIANTS VSEWSKEVLS RVSNPEPQNV 360
  361 PSVSFYDVAL PVNLFFIGIS FARFGLWLAD PAITQIQQET IPESQRYMAF TVQIALNEVF 420
  421 SILKDIIVIM FPFTPLFGVL TLGSCVFVFT GFMFNVFYHA QCGFSCVNKN MHLGRQPVCE 480
  481 MATLSSPEKQ SLMGDEKEKP KVLDSPTFE