YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ptc-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	89	0.75
Transmembrane Helix	90	112	0.77
Non-Cytoplasmic	113	616	0.70
Transmembrane Helix	617	636	0.93
Cytoplasmic	637	650	0.53
Transmembrane Helix	651	673	0.90
Non-Cytoplasmic	674	680	0.53
Transmembrane Helix	681	702	0.61
Cytoplasmic	703	726	0.81
Transmembrane Helix	727	748	0.84
Non-Cytoplasmic	749	757	0.75
Transmembrane Helix	758	779	0.94
Cytoplasmic	780	860	0.94
Transmembrane Helix	861	879	0.50
Non-Cytoplasmic	880	1135	0.52
Transmembrane Helix	1136	1158	0.90
Cytoplasmic	1159	1162	0.43
Transmembrane Helix	1163	1186	0.86
Non-Cytoplasmic	1187	1190	0.47
Transmembrane Helix	1191	1215	0.79
Cytoplasmic	1216	1232	0.50
Transmembrane Helix	1233	1253	0.88
Non-Cytoplasmic	1254	1261	0.48
Transmembrane Helix	1262	1287	0.85
Cytoplasmic	1288	1361	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVHSEQPPG KDEPGPIRRF LENRLIGNFD SEDFSDAWKK KFAHAPTWCD ADMSLQQIKR  60
   61 GKAVGNTVAL TARAFFQLWL FRIGCFVQRW AWSTIFISLF LYCLCLGGLR HVTIETDLVK 120
  121 LWVSEGGRLN EEMGYLGQVK FERESGHLVH KVKRAVEQTT EPPAPAVKAE VRRGPELPKE 180
  181 NGLGGGFQVV IQTPSFDGQN ILSKEALQQH TKLMEEISTY EVKMFNETWT LSDICFKPPG 240
  241 PSFNSGPLAG IMSKLLDKII PCIWITPIDC YWDGAKPLGP NPPLNLGPEV ASFVSSLPPG 300
  301 NVTWKNLNPT SVIKEVGTLF DLGPIGNFFE RAGIDGAYLD RPCIDPLEEE CPKSAPNYFD 360
  361 RCHALTKFNE WNMAKAMSEQ VTLERKIIPK DDGKSDIAET ILNDIFGKKR RKRQADTTTK 420
  421 KPATKKDEDY YEYEDDADYL AGIANSTIAK KNPEKEAKDL LCLEYGSSLL KWMQENPERL 480
  481 GEFLTKEEMP DYPNYGDVMT GGCKGFGKKI MEWPEDLIIG GIQRDNGKLV SAEALQSVFL 540
  541 VSGAYDVFAR IKNDKTDSHP GLDRHHFQPW MAGEIISTWQ RNFTKRLYSH ELNRERRQFH 600
  601 PLASTSIADM LEEFSQFNYI IIVIGYILMV IYAAFTQGRF QGWWLAVQSN VALAICGVIL 660
  661 VTISSICGLG FATHLGINFN AATTQVVPFL SLGLGIDDMF LLLHNYDEII NICNKNEIGV 720
  721 LLKETGMSVM LTSINNILAF ISGYVLPIPA LRSFCSQTAI LLAFNLIFLM FIFPAMIGID 780
  781 LRRQRKGKRD LAYCSRGNPQ MATSQSVPSN VSNNTQMSSR AELAGYEKQA DEYKRHEPWY 840
  841 TVGGFLNKIY IPALKNNVVK ACVLIGTTTA VVFGLYGMYT STLGLELADV LPEHTPPAAF 900
  901 LRAREQYFSF YPMFAVLRGD KLDIPNQQQL IEEYRAQLGS SKFMIKAEGK LQPYWMSMLR 960
  961 VWLQSLDMAL EKDLAAGKFD LTNGNPIKVN GEKPSPESMI AARLVCSFGT NYNCDGRLGK1020
 1021 MKMVENEVIN PEGFYNYLTG WFNVDNMMYY VSQASFYPTP PGWEYNEKLA KVVPAAEPLL1080
 1081 YSQMPFYQND LIDTPAIVKM IEEIRATCEE YSERGLSNHP SGIAFTFWEQ YLTLRWNLFQ1140
 1141 AICIIALAVF CVISILMFNP WAATLIMCIV VITTIELGGF MGLMGIKMNP ISAVTLICAV1200
 1201 GIGVEFTAHV ELAFLTALGT IDQRLESCLQ HMFVPVYHGA ISTFLGVVML VFSEFDFVVT1260
 1261 YFFYTMTLLV ALGVFNGLCV LPVILTLVGP KPELTPTDGS SVLPPPPPLR QQYAEKSGGV1320
 1321 EGGMRKRKEK RPAEVEMSAR DSPSTSSASH SSDDESSPAH K