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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ptc-3
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVHSEQPPG KDEPGPIRRF LENRLIGNFD SEDFSDAWKK KFAHAPTWCD ADMSLQQIKR  60
   61 GKAVGNTVAL TARAFFQLWL FRIGCFVQRW AWSTIFISLF LYCLCLGGLR HVTIETDLVK 120
  121 LWVSEGGRLN EEMGYLGQVK FERESGHLVH KVKRAVEQTT EPPAPAVKAE VRRGPELPKE 180
  181 NGLGGGFQVV IQTPSFDGQN ILSKEALQQH TKLMEEISTY EVKMFNETWT LSDICFKPPG 240
  241 PSFNSGPLAG IMSKLLDKII PCIWITPIDC YWDGAKPLGP NPPLNLGPEV ASFVSSLPPG 300
  301 NVTWKNLNPT SVIKEVGTLF DLGPIGNFFE RAGIDGAYLD RPCIDPLEEE CPKSAPNYFD 360
  361 RCHALTKFNE WNMAKAMSEQ VTLERKIIPK DDGKSDIAET ILNDIFGKKR RKRQADTTTK 420
  421 KPATKKDEDY YEYEDDADYL AGIANSTIAK KNPEKEAKDL LCLEYGSSLL KWMQENPERL 480
  481 GEFLTKEEMP DYPNYGDVMT GGCKGFGKKI MEWPEDLIIG GIQRDNGKLV SAEALQSVFL 540
  541 VSGAYDVFAR IKNDKTDSHP GLDRHHFQPW MAGEIISTWQ RNFTKRLYSH ELNRERRQFH 600
  601 PLASTSIADM LEEFSQFNYI IIVIGYILMV IYAAFTQGRF QGWWLAVQSN VALAICGVIL 660
  661 VTISSICGLG FATHLGINFN AATTQVVPFL SLGLGIDDMF LLLHNYDEII NICNKNEIGV 720
  721 LLKETGMSVM LTSINNILAF ISGYVLPIPA LRSFCSQTAI LLAFNLIFLM FIFPAMIGID 780
  781 LRRQRKGKRD LAYCSRGNPQ MATSQSVPSN VSNMSSRAEL AGYEKQADEY KRHEPWYTVG 840
  841 GFLNKIYIPA LKNNVVKACV LIGTTTAVVF GLYGMYTSTL GLELADVLPE HTPPAAFLRA 900
  901 REQYFSFYPM FAVLRGDKLD IPNQQQLIEE YRAQLGSSKF MIKAEGKLQP YWMSMLRVWL 960
  961 QSLDMALEKD LAAGKFDLTN GNPIKVNGEK PSPESMIAAR LVCSFGTNYN CDGRLGKMKM1020
 1021 VENEVINPEG FYNYLTGWFN VDNMMYYVSQ ASFYPTPPGW EYNEKLAKVV PAAEPLLYSQ1080
 1081 MPFYQNDLID TPAIVKMIEE IRATCEEYSE RGLSNHPSGI AFTFWEQYLT LRWNLFQAIC1140
 1141 IIALAVFCVI SILMFNPWAA TLIMCIVVIT TIELGGFMGL MGIKMNPISA VTLICAVGIG1200
 1201 VEFTAHVELA FLTALGTIDQ RLESCLQHMF VPVYHGAIST FLGVVMLVFS EFDFVVTYFF1260
 1261 YTMTLLVALG VFNGLCVLPV ILTLVGPKPE LTPTDGSSVL PPPPPLRQQY AEKSGGVEGG1320
 1321 MRKRKEKRPA EVEMSARDSP STSSASHSSD DESSPAHK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle