YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hke-4.1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	82	0.99
Transmembrane Helix	83	105	0.95
Cytoplasmic	106	113	0.89
Transmembrane Helix	114	135	0.92
Non-Cytoplasmic	136	167	0.95
Transmembrane Helix	168	188	0.86
Cytoplasmic	189	300	0.90
Transmembrane Helix	301	320	0.92
Non-Cytoplasmic	321	332	0.71
Transmembrane Helix	333	352	0.92
Cytoplasmic	353	371	0.77
Transmembrane Helix	372	391	0.94
Non-Cytoplasmic	392	393	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLQLVALLF ALVFNAFSHE HSHEHHHEGD GSEILTKVGW NDHSEELHDH HEHDHDHHDE  60
   61 QLIRKNHTSH REIQHSRLST LKVWVFSLSA VVGISLAPCT LLFFIPAQHA NGPFLKILLA 120
  121 FGAGGLLGDA LLHIIPHSLS PHDHSHDHHD HNHSHKEHDH SHDHSNQLRV GTFVIAGILV 180
  181 FMMVEQLVRI IKGGHCHSHE NGHIVADEHR HLNEHDHEHS EEKKQQVEGL KDVKASAYLN 240
  241 LVADFVHNVT DGLAIGASFS AGNTLGWITT LTVLLHELPH EVGDFAILVQ SGFSKYQAIR 300
  301 LQAVTALGAI TGCVFSLLVS NPGSLNNDAD TSAIMPFTAG GFIYIATVSV VPELLESGDH 360
  361 NNLSKVAKMA QSLVHVLAIC MGVGMMYIVS LVE