YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pmp-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLQVIEKK FEFGFRVFYN LFRLFPLIYS NTWLTLVLTA VTIAASVGNE IVNYKTGVIP  60
   61 GKFYVALIEK DEPKFWHIFW IASLCYVGLC LLMALMNFFS WCLYIQQRKN LVQCLHKLYY 120
  121 KNNFYYQLNG VDDHGIDNPD QRITQDADKL TKLLGTSIIP TVLLSPFIIS YYGVRVWETA 180
  181 GGWGFGMIVA YFLIGVIINR ILIGPITPWA ARVEKAEGDF RYKHVSVRVN AEESAFYKSA 240
  241 EFEHVFSDLS FDVLFKRLLN FMCWRFPSQF FQSFFDYYGG CMSYILQLFP LFVFHMYDNL 300
  301 TPAELSGQIS NNAFYFIYLI NCFTRLTDLA MNIAELGGYI MRFYSEHFCN FCLVSEFVDT 360
  361 GKLHQSGIKN EAFRRNSELP EKASGDDNLI ETEHLSFGPP TNSNIRIIEM GGFMIFVLIL 420
  421 FQSGYTDLTF HLPRNKTLLI TGDSGIGKTS LMRVIADMWP HQGILKKHFK KTDAYFLPQK 480
  481 PYFPVGRLSL KQQLVFPAEE NEEKSGNDEE IVRILHELKL GHLLPIVGNI HDSVDFEWQE 540
  541 TLSPGEQQRL CFARMILAEP TVAFLDESTC NVDEGMENAM YEMLRKHSIT YISVGHRKSL 600
  601 RSHHDFELRI PSSSSFLFHE IHNQKF

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	44	0.86
Non-Cytoplasmic	45	77	0.92
Transmembrane Helix	78	101	0.89
Cytoplasmic	102	152	0.95
Transmembrane Helix	153	174	0.90
Non-Cytoplasmic	175	180	0.87
Transmembrane Helix	181	203	0.91
Cytoplasmic	204	273	0.97
Transmembrane Helix	274	294	0.82
Non-Cytoplasmic	295	313	0.71
Transmembrane Helix	314	333	0.55
Cytoplasmic	334	404	0.75
Transmembrane Helix	405	425	0.76
Non-Cytoplasmic	426	626	0.76