YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acr-23
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRIYTFLIF ISQLALGLSN NPDIPIQYEL ANNIMENYQK GLIPKVRKGS PINVTLSLQL  60
   61 YQIIQVNEPQ QYLLLNAWAV ERWVDQMLGW DPSEFDNETE IMARHDDIWL PDTTLYNSLE 120
  121 MDDSASKKLT HVKLTTLGKN QGAMVELLYP TIYKISCLLN LKYFPFDTQT CRMTFGSWSF 180
  181 DNSLIDYFPR TFTNGPIGLA NFLENDAWSV LGTKVNREEK KYTCCPVNYT LLHYDVVIQR 240
  241 KPLYYVLNLI APTAVITFIS IIGFFTSVNP FTNFCNVSSS VHDLRQEKIT LGITTLLSMS 300
  301 IMIFMVSDKM PSTSTCVPLI ALFYTLMITI ISVGTLAASS VIFVQKLGSI GNPPASKTMK 360
  361 WTHRIAPFVL IQMPLVMKQA YAKRAKEEKH RKRMSRKNSM WTKVYHLARD HSKLMETVPD 420
  421 GAVKFNQISD FKNNDIGNME SPRMAESQTS ETFAAPMDTS FTESLHIPEL NRVASSNSIQ 480
  481 SVLKPTEIQL TPYCTRNIVE LEWDWVAAVL ERVFLIFFTI CFLFSAIGIN LYGWYIWYTE 540
  541 NHFLF

Type	Start	End	Confidence
Cytoplasmic	1	243	0.71
Transmembrane Helix	244	268	0.83
Non-Cytoplasmic	269	288	0.70
Transmembrane Helix	289	307	0.94
Cytoplasmic	308	319	0.61
Transmembrane Helix	320	343	0.89
Non-Cytoplasmic	344	360	0.70
Transmembrane Helix	361	382	0.66
Cytoplasmic	383	512	0.99
Transmembrane Helix	513	536	0.92
Non-Cytoplasmic	537	545	0.94