YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37007
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.96
Transmembrane Helix	38	57	0.92
Non-Cytoplasmic	58	94	0.93
Transmembrane Helix	95	114	0.94
Cytoplasmic	115	121	0.84
Transmembrane Helix	122	142	0.92
Non-Cytoplasmic	143	148	0.72
Transmembrane Helix	149	172	0.82
Cytoplasmic	173	186	0.75
Transmembrane Helix	187	206	0.86
Non-Cytoplasmic	207	216	0.68
Transmembrane Helix	217	237	0.93
Cytoplasmic	238	280	0.96
Transmembrane Helix	281	304	0.86
Non-Cytoplasmic	305	320	0.82
Transmembrane Helix	321	344	0.78
Cytoplasmic	345	355	0.92
Transmembrane Helix	356	377	0.91
Non-Cytoplasmic	378	382	0.82
Transmembrane Helix	383	404	0.80
Cytoplasmic	405	413	0.65
Transmembrane Helix	414	437	0.87
Non-Cytoplasmic	438	451	0.78
Transmembrane Helix	452	473	0.92
Cytoplasmic	474	513	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMHKDTDQLL RSMSSVHPIS DGIPSQQRPL TYRWFPSWRF MTSIMLCFCF GCVHLMNSNM  60
   61 GMAIVCMVNS SATYDNETYP ENAAPLLDWS SDEQGYIFSA FNAGLLVMLF TGGMADKFNA 120
  121 KYMILVSVAI ASLANFTLPW MAPISVYWAI FSRFLVGFAD ALLQPAMNSL ITRWFPTSER 180
  181 SYALGLATGG RQIGTLIIIP AAGALCSQTE IFGGWPSIFY LSGFIGVLFI FSYIFLGADK 240
  241 PSKQSCISDN ELKFITISNQ SEDVGKKRTE RKVPWKNILK SGAVWASVIS LVCHEFPLMT 300
  301 LIMFLPSYLH DVHHYHSTEN GILSALPTVS LWFAKIGSSY LNTWLQKNTT WKKDTICKVL 360
  361 NSIGSIGLGV FLLAATFLDN EHAWMAVLFL CLSMASAGLH TPGCQLALVS VAPAYSGAVT 420
  421 GFTFFFVAVS GIIHPIITKM IVKDRTAAEW NLVFYISTVI AIFPIIIFNV WGSTEVQWWA 480
  481 KSKASMQQEP NNKKMSKSSK ASSSPSIDSI DMA