YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ptc-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.58
Transmembrane Helix	48	64	0.38
Non-Cytoplasmic	65	111	0.72
Transmembrane Helix	112	132	0.73
Cytoplasmic	133	139	0.80
Transmembrane Helix	140	164	0.89
Non-Cytoplasmic	165	172	0.73
Transmembrane Helix	173	195	0.83
Cytoplasmic	196	215	0.91
Transmembrane Helix	216	238	0.87
Non-Cytoplasmic	239	248	0.73
Transmembrane Helix	249	269	0.93
Cytoplasmic	270	331	0.97
Transmembrane Helix	332	352	0.81
Non-Cytoplasmic	353	548	0.88
Transmembrane Helix	549	571	0.87
Cytoplasmic	572	576	0.68
Transmembrane Helix	577	599	0.89
Non-Cytoplasmic	600	606	0.77
Transmembrane Helix	607	631	0.87
Cytoplasmic	632	644	0.81
Transmembrane Helix	645	665	0.92
Non-Cytoplasmic	666	667	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENMYPQNV DYAAEMTGGC SGFASNVLNW PEDMILGNPR RAKKGGKLSG ADALQFVFLV  60
   61 ASPADVFLRF KQSLEETLET LSLYEEHCIH LHRHPLLICS RNSVNSTIPS SLLDMLSCWH 120
  121 MLLLLILDLT TAFRLQNHQW GFALAGVLVV TFASVAGIGL ATWFGIEFNA ATTQIVPFLT 180
  181 LGIGVDNMFM LLHNYRDVVK LAGGHAEMAI LMRETGMSIL CTSINNILSF LTGTLLPIPA 240
  241 LRSFCAQSSI LLTFNFIAIL TIYPAIISID LRRKKAQRRD FDTREESTSE ASIMQQFDGI 300
  301 TQAQMASSDD PAPWSLHSFI RYYYIPFISK PASKVAIIVG CCALLGASFV GMRQSTLGLE 360
  361 LGDVLPEHTA PAQFLRARDK YFSFYPMFAV IKGPNIDYAH QQRQIDNYRQ SIGSSKYVIK 420
  421 NKNEEPSEKY WLGLMRDWLI SIQRGFDEEV AKGSFNLTSG TVIGSNVSED ARLAHALMCS 480
  481 HGSLFECAGR IGKIRLIPFY LTGLTDTAVI VDAIKDIRSV CERFTDQGLP NFPQGIAFTF 540
  541 WEQYLFLTGN LMQAISIITI SVFCVISVLL FNPWAALMVV CILGIMTCEL AGFMGLVGIK 600
  601 LNPVSAVTLI TAVGIGVEFT VHVVVSFLTA LGTRSQRTSS AVDRVFVPVI HGSFSTLLGI 660
  661 LMLGFSV