YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-36
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.79
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHRISKFTV SLIIFFISTI ILSVCGNELK FTIENVKFRS PGSFRIKRTV HPKREKGVAQ  60
   61 NVTHLLNNVL KNYDQHFRPG FNSGKPTKVY IDLFIRTMGP VSDLFNTYSF NCYFRQKWTD 120
  121 DRLHFNNSGI GFRQLSLSMA MLDKIWKPDT YFWNGAGSYV HGITTSNRLV RLEPDGTILY 180
  181 SSRITVKAKC QMDMSRYPLD KQACRLVIGS YAYSSDEVQY KWRIMGDDNG VKIDYESIAD 240
  241 LPQFSLSGFK VYKPANITRD KEYSALEVRF YFDRHFGYFL MNFYVPCALV VLLCWVAFFT 300
  301 KREATAERIG IGITNVLTIV LISMDSKSDS PKVDSPTALE VFIWICYLTH LICMVEFTVV 360
  361 HYHTKYNTGD PEIQEVERER LRQIIKQIPK NTNNRATEPT FRRRNAALPV SIARPLPNKT 420
  421 KRFMSVRQPK KSEQTESIQL MRKISNMEST THNEVESSLN LESIRQENVG WRLYYWMIDH 480
  481 NIKTDPFGVA QNSTSRIDKI SVIVAPLIFI LTIALYYDFY VNRVFKFNFD NDFGTM

Type	Start	End	Confidence
Signal Peptide	1	26	0.78
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	275	0.98
Transmembrane Helix	276	299	0.90
Cytoplasmic	300	308	0.82
Transmembrane Helix	309	324	0.55
Non-Cytoplasmic	325	340	0.46
Transmembrane Helix	341	360	0.51
Cytoplasmic	361	499	0.94
Transmembrane Helix	500	520	0.88
Non-Cytoplasmic	521	536	0.91