YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pdfr-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADATSPFNV SILDNSTKLS EMVESGWNVL ASTSVQAFNE AMDVLEESYP LCKKMLDHNN  60
   61 LFPERDPNDT RIWCNATYDT VLCWPPTPAN SSVTLQCPHM KGLDPNKYIV KRCDETGRWA 120
  121 GKKPGHYENP WGWTNFTVCF KIDYEDAKIA QEVARNARKL EFVGLGLSLV SLILAISIFS 180
  181 YFRRLRVFRN LLHLHLMIAM LMVVILRLVL YIDLIFTGEN GPHTNSAEGK TINTMPIVCE 240
  241 GMFFFLEYFK TVTFCWMFLE GIYLNNQIVF GFFNSEPKLL PYFIAGYGIP LVHTMLWLLV 300
  301 VLIKKDFKVE RCLGSYYLEP EFWILDGPRM AELVINLFFI CNVIRVLYSK VRESNNTSEA 360
  361 GLKKSVKAAM MLLPLLGVPN IMQTIPFAPT RDNIMVFAVW TYTASFTYMY QGLMVASIYC 420
  421 FTNKEVNHVL KTFYARYRLL HKSQNELRRG SRSVASHYAA KNGTANASAP QTNNADEFGK 480
  481 LSPFPSRSKK GSDDSTTKLM KDAVMEEEKN ANNNGYGSAG EMTPLREGSN RSTKSP

Type	Start	End	Confidence
Non-Cytoplasmic	1	161	0.58
Transmembrane Helix	162	182	0.94
Cytoplasmic	183	190	0.54
Transmembrane Helix	191	212	0.91
Non-Cytoplasmic	213	278	0.46
Transmembrane Helix	279	301	0.88
Cytoplasmic	302	367	0.63
Transmembrane Helix	368	387	0.83
Non-Cytoplasmic	388	397	0.75
Transmembrane Helix	398	421	0.73
Cytoplasmic	422	536	0.90