YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE36914
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.80
Transmembrane Helix	7	27	0.85
Non-Cytoplasmic	28	62	0.86
Transmembrane Helix	63	85	0.70
Cytoplasmic	86	96	0.78
Transmembrane Helix	97	120	0.87
Non-Cytoplasmic	121	156	0.75
Transmembrane Helix	157	176	0.81
Cytoplasmic	177	196	0.62
Transmembrane Helix	197	216	0.83
Non-Cytoplasmic	217	227	0.76
Transmembrane Helix	228	249	0.91
Cytoplasmic	250	268	0.58
Transmembrane Helix	269	285	0.54
Non-Cytoplasmic	286	321	0.72
Transmembrane Helix	322	344	0.89
Cytoplasmic	345	351	0.69
Transmembrane Helix	352	371	0.89
Non-Cytoplasmic	372	391	0.64
Transmembrane Helix	392	412	0.82
Cytoplasmic	413	417	0.44
Transmembrane Helix	418	440	0.76
Non-Cytoplasmic	441	446	0.43
Transmembrane Helix	447	466	0.75
Cytoplasmic	467	468	0.33
Transmembrane Helix	469	483	0.61
Non-Cytoplasmic	484	484	0.08
Transmembrane Helix	485	499	0.80
Cytoplasmic	500	758	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEVQLVLAV TAILISFKCL LIPAYVSTDF EVHRNWMAVT WQRPLCEWYT EATSEWTLDY  60
   61 PPFFAYFELG LASVAHFFGF DECLVISKTP RFSRRILIFQ RFSVIFCDIL YIAVCALYSF 120
  121 RSPRLVSRIP KKLQQNGREA CFVLLASLQA LIICDSIHFQ YNSMLTAIFL MSLFFIDTER 180
  181 YLMAALSYSI LLNFKHIYVY YALGYVFYYL VNYFQFSGNV LLANTPKAIS LAIALLIPFC 240
  241 ASIFPFIHAS GVQGLQNIAT RLFPVSRGLT HAYWAPNFWA LYNFADLCLY RVLSLLKIGK 300
  301 FDAPTYTSGL VQEYSHSVLP NVSPMGTLCL VVISSMIVLT GLVIRRKDSA DFSLFAVFSA 360
  361 FCFFYFGYHV HEKAIILVTV PMTVFAIKNP KYHSILIHLT CIASFSLFPL LFTPFETLLK 420
  421 YAICVSYFFI QLVFLKRVTL MPLSDLIPTR HVASWLLMGM VEWLWTSRLP FAPLMAISIL 480
  481 TAIELTGLIG ALIWSTFGDG IFEIWWAKAT CQIRERLIRD STYSVQAVED LDDVKLVAGI 540
  541 DTSAAKLNSD MVYISVSFWT YPDLKHVATI SDTRMLELPY IPQYLAVREA EVMADFLKSV 600
  601 ITERPELRPD VILCDGFGEF HSRGCGMACH VGALSGIASI GVAKNLTLHH TYETIGMENK 660
  661 SKVDSFVEHC REVYKNNKTS PGFIPFDIVE PVVLNILRMG SSMNGVFVSA GYGIDLELST 720
  721 EICSQLLLNN TTIEPIRAAD LESRRLVREN FDGNEKLE