YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CPT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFFIPQSSL GNLKLYKYQS DDRSFLSNHV LRPFWRKFAT IFPLWMAPNL VTLLGFCFII  60
   61 FNVLTTLYYD PYFDQESPRW TYFSYAIGLF LYQTFDACDG MHARRTGQQG PLGELFDHCI 120
  121 DSINTTLSMI PVCSMTGMGY TYMTIFSQFA ILCSFYLSTW EEYHTHKLYL AEFCGPVEGI 180
  181 IVLCISFIAV GIYGPQTIWH TKVAQFSWQD FVFDVETVHL MYAFCTGALI FNIVTAHTNV 240
  241 VRYYESQSTK SATPSKTAEN ISKAVNGLLP FFAYFSSIFT LVLIQPSFIS LALILSIGFS 300
  301 VAFVVGRMII AHLTMQPFPM VNFPFLIPTI QLVLYAFMVY VLDYQKGSIV SALVWMGLGL 360
  361 TLAIHGMFIN DIIYDITTFL DIYALSIKHP KEI

Type	Start	End	Confidence
Cytoplasmic	1	40	0.95
Transmembrane Helix	41	64	0.89
Non-Cytoplasmic	65	137	0.85
Transmembrane Helix	138	160	0.86
Cytoplasmic	161	172	0.79
Transmembrane Helix	173	193	0.86
Non-Cytoplasmic	194	217	0.85
Transmembrane Helix	218	241	0.89
Cytoplasmic	242	261	0.92
Transmembrane Helix	262	284	0.84
Non-Cytoplasmic	285	288	0.76
Transmembrane Helix	289	311	0.90
Cytoplasmic	312	319	0.81
Transmembrane Helix	320	341	0.90
Non-Cytoplasmic	342	348	0.75
Transmembrane Helix	349	369	0.88
Cytoplasmic	370	393	0.81