YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATG15
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHKSPSRKR FASPLHLGCI LTLTVLCLIA YYFALPDYLS VGKSSSRGAM DQKSDGTFRL  60
   61 KSIYRHGVGA NHRLHQRLEV TPEVISAAGM LYQETTTQGQ DFEDQEPLWT TNAEYATTNP 120
  121 FDFEFELRRM PLLMKRMKER DPEFIESYIY GETYMTEEEE HAMWIDDDIV APNITDRGTV 180
  181 VSLALMSSNA YVRIPQTGDW RNVTEPWNET EPEDFGWDGD GIRGHVFYNE VENIVVLSIK 240
  241 GTSAQGLPGS GEDETTGNDK INDNLLFSCC CARVSYLWTT VCDCYVKSYI CDESCLEKEL 300
  301 RRKDRFYSAV VDIYKGVLKE YPMRPYGSQA THWEAHWPVY WAALLDCLRS HSSPLESYYL 360
  361 QKDFTYHSHR DFPHTWRVSG TSVTTQTQSS WVHATELVQV AHWWATLWKP RATLVESVST 420
  421 MWSTTRAGV

Type	Start	End	Confidence
Cytoplasmic	1	13	0.48
Transmembrane Helix	14	35	0.49
Non-Cytoplasmic	36	429	0.99