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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AB32G_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWNSAENAFS RSTSFKDEIE DEEELRWAAL QRLPTYSRIR RGIFRDMVGE PKEIQIGNLE  60
   61 ASEQRLLLDR LVNSVENDPE QFFARVRKRF DAVDLKFPKI EVRFQNLMVE SFVHVGSRAL 120
  121 PTIPNFIINM AEGLLRNIHV IGGKRNKLTI LDGISGVIRP SRLTLLLGPP SSGKTTLLLA 180
  181 LAGRLGTNLQ TSGKITYNGY DLKEIIAPRT SAYVSQQDWH VAEMTVRQTL EFAGRCQGVG 240
  241 FKYDMLLELA RREKLAGIVP DEDLDIFMKS LALGGMETSL VVEYVMKILG LDTCADTLVG 300
  301 DEMIKGISGG QKKRLTTGEL LVGPARVLFM DEISNGLDSS TTHQIIMYMR HSTHALEGTT 360
  361 VISLLQPSPE TYELFDDVIL MSEGQIIYQG PRDEVLDFFS SLGFTCPDRK NVADFLQEVT 420
  421 SKKDQQQYWS VPFRPYRYVP PGKFAEAFRS YPTGKKLAKK LEVPFDKRFN HSAALSTSQY 480
  481 GVKKSELLKI NFAWQKQLMK QNAFIYVFKF VQLLLVALIT MTVFCRTTMH HNTIDDGNIY 540
  541 LGSLYFSMVI ILFNGFTEVP MLVAKLPVLY KHRDLHFYPS WAYTLPSWLL SIPTSIIESA 600
  601 TWVAVTYYTI GYDPLFSRFL QQFLLYFSLH QMSLGLFRVM GSLGRHMIVA NTFGSFAMLV 660
  661 VMTLGGFIIS RDSIPSWWIW GYWISPLMYA QNAASVNEFL GHNWQKTAGN HTSDSLGLAL 720
  721 LKERSLFSGN YWYWIGVAAL LGYTVLFNIL FTLFLAHLNP WGKFQAVVSR EELDEREKKR 780
  781 KGDEFVVELR EYLQHSGSIH GKYFKNRGMV LPFQPLSLSF SNINYYVDVP LGLKEQGILE 840
  841 DRLQLLVNIT GAFRPGVLTA LVGVSGAGKT TLMDVLAGRK TGGTIEGDVY ISGFPKRQET 900
  901 FARISGYCEQ NDVHSPCLTV VESLLFSACL RLPADIDSET QRAFVHEVME LVELTSLSGA 960
  961 LVGLPGVDGL STEQRKRLTI AVELVANPSI VFMDEPTSGL DARAAAIVMR TVRNIVNTGR1020
 1021 TIVCTIHQPS IDIFESFDEL LFMKRGGELI YAGPLGQKSC ELIKYFESIE GVQKIKPGHN1080
 1081 PAAWMLDVTA STEEHRLGVD FAEIYRNSNL CQRNKELIEV LSKPSNIAKE IEFPTRYSQS1140
 1141 LYSQFVACLW KQNLSYWRNP QYTAVRFFYT VVISLMLGTI CWKFGSKRDT QQQLFNAMGS1200
 1201 MYAAVLFIGI TNATAAQPVV SIERFVSYRE RAAGMYSALP FAFAQVFIEF PYVLAQSTIY1260
 1261 STIFYAMAAF EWSAVKFLWY LFFMYFSIMY FTFYGMMTTA ITPNHNVASI IAAPFYMLWN1320
 1321 LFSGFMIPYK RIPLWWRWYY WANPVAWTLY GLLVSQYGDD ERSVKLSDGI HQVMVKQLLE1380
 1381 DVMGYKHDFL GVSAIMVVAF CVFFSLVFAF AIKAFNFQRR 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle