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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AB33G_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.41
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSFRSSSS RNEHEDGGDE AEHALQWAEI QRLPTFKRLR SSLVDKYGEG TEKGKKVVDV  60
   61 TKLGAMERHL MIEKLIKHIE NDNLKLLKKI RRRMERVGVE FPSIEVRYEH LGVEAACEVV 120
  121 EGKALPTLWN SLKHVFLDLL KLSGVRTNEA NIKILTDVSG IISPGRLTLL LGPPGCGKTT 180
  181 LLKALSGNLE NNLKCYGEIS YNGHGLNEVV PQKTSAYISQ HDLHIAEMTT RETIDFSARC 240
  241 QGVGSRTDIM MEVSKREKDG GIIPDPEIDA YMKAISVKGL KRSLQTDYIL KILGLDICAE 300
  301 TLVGNAMKRG ISGGQKKRLT TAEMIVGPTK ALFMDEITNG LDSSTAFQII KSLQQVAHIT 360
  361 NATVFVSLLQ PAPESYDLFD DIVLMAEGKI VYHGPRDDVL KFFEECGFQC PERKGVADFL 420
  421 QEVISKKDQG QYWLHQNLPH SFVSVDTLSK RFKDLEIGRK IEEALSKPYD ISKTHKDALS 480
  481 FNVYSLPKWE LFRACISREF LLMKRNYFVY LFKTFQLVLA AIITMTVFIR TRMDIDIIHG 540
  541 NSYMSCLFFA TVVLLVDGIP ELSMTVQRLS VFYKQKQLCF YPAWAYAIPA TVLKIPLSFF 600
  601 ESLVWTCLTY YVIGYTPEPY RFFRQFMILF AVHFTSISMF RCIAAIFQTG VAAMTAGSFV 660
  661 MLITFVFAGF AIPYTDMPGW LKWGFWVNPI SYAEIGLSVN EFLAPRWQKM QPTNVTLGRT 720
  721 ILESRGLNYD DYMYWVSLSA LLGLTIIFNT IFTLALSFLK SPTSSRPMIS QDKLSELQGT 780
  781 KDSSVKKNKP LDSSIKTNED PGKMILPFKP LTITFQDLNY YVDVPVEMKG QGYNEKKLQL 840
  841 LSEITGAFRP GVLTALMGIS GAGKTTLLDV LAGRKTSGYI EGEIRISGFL KVQETFARVS 900
  901 GYCEQTDIHS PSITVEESLI YSAWLRLVPE INPQTKIRFV KQVLETIELE EIKDALVGVA 960
  961 GVSGLSTEQR KRLTVAVELV ANPSIIFMDE PTTGLDARAA AIVMRAVKNV AETGRTIVCT1020
 1021 IHQPSIHIFE AFDELVLLKR GGRMIYSGPL GQHSSCVIEY FQNIPGVAKI RDKYNPATWM1080
 1081 LEVTSESVET ELDMDFAKIY NESDLYKNNS ELVKELSKPD HGSSDLHFKR TFAQNWWEQF1140
 1141 KSCLWKMSLS YWRSPSYNLM RIGHTFISSF IFGLLFWNQG KKIDTQQNLF TVLGAIYGLV1200
 1201 LFVGINNCTS ALQYFETERN VMYRERFAGM YSAFAYALAQ VVTEIPYIFI QSAEFVIVIY1260
 1261 PMIGFYASFS KVFWSLYAMF CNLLCFNYLA MFLISITPNF MVAAILQSLF FTTFNIFAGF1320
 1321 LIPKPQIPKW WVWFYYITPT SWTLNLFFSS QYGDIHQKIN AFGETKTVAS FLEDYFGFHH1380
 1381 DRLMITAIIL IAFPIALATM YAFFVAKLNF QKR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle