YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RETIC_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV  60
   61 NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD QLENLDIDGN VGDGFNGSDG 120
  121 NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK 180
  181 VLLLRYLDLQ SSAGLLGFAI RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG 240
  241 KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE 300
  301 AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP 360
  361 LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP PAAMAFTVGV RLANNIYGGM 420
  421 QFVDWARLSG CQ

Type	Start	End	Confidence
Cytoplasmic	1	248	0.72
Transmembrane Helix	249	272	0.83
Non-Cytoplasmic	273	320	0.65
Transmembrane Helix	321	343	0.86
Cytoplasmic	344	432	0.63