YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25408576, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSKNVVVV EAWNTTTTTQ TQTPHRPSLL HPTFYWGYNC QVLFSGWPGS DRGMYALALI  60
   61 FVFFLAFLAE WLARCSDASS IKQGADKLAK VAFRTAMYTV KSGFSYLVIL AVVSFNGGVF 120
  121 LAAIFGHALG FAVFPPMAAT MIGINLSCFK STSFFSPDLN SLQSKLSLLS LKPSPTQPRK 180
  181 STVIRMGGGP RTFPGGVSKW QWKRMQAKKQ KQLLKARLCR ERQIYEMRKR AELKAAVAEL 240
  241 ERPWEPIHKP PNLFSVCADE QVKVLADRFQ KPGGFDLWTD RDGPQLFESV DDLPSARFFP 300
  301 KGVVHSVKPY GRLSSSSVVD DGDESEVKDE EIGKKLRGRR VRKRGDDGGK RRTENRGNGG 360
  361 RLRNGGSSSS QVYDMTLQND GRYEIGS

Type	Start	End	Confidence
Non-Cytoplasmic	1	52	0.74
Transmembrane Helix	53	73	0.93
Cytoplasmic	74	102	0.78
Transmembrane Helix	103	125	0.84
Non-Cytoplasmic	126	127	0.47
Transmembrane Helix	128	149	0.76
Cytoplasmic	150	387	0.83