YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30725648, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLSLQSPPC ATLSASIRKG RWKTLAAGFS VTPLPAVNFS LRRSIPRILA SASSSSSPAS  60
   61 SSLEAGENNE LNAVSAFSEI VPDTVVFDDF ERFPPTAATV SSALLLGICG LPDTIFRNAV 120
  121 DMALADSSCA GLETTESRLS CFFNKAIVNV GGDLVKLVPG RVSTEVDARL AYDTNGIIRK 180
  181 VHDLLRLYNE IDVPHDRLLF KIPATWQGIE AARLLESEGI QTHMTFVYSF AQAAAASQAG 240
  241 ASVIQIFVGR LRDWARNHSG DTEIESAIKS GEDPGLALVK RSYNYIHKYG YKSKLMAAAV 300
  301 RNKQDLFSLL GVDYVIAPLK VLQSLKDSPA IPDDEKYSFV RKLTPETATH YHFTNKELVK 360
  361 WDQLSLASSM GPASVELLSA GVEGYANQAK RVEELFGKIW PPPNV

Type	Start	End	Confidence
Signal Peptide	1	39	0.57
N-region	1	30
H-region	31	36
C-region	37	39
Cleavage Site	39	40
Non-Cytoplasmic	40	405	0.92