YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RMV1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.94
Transmembrane Helix	53	73	0.67
Non-Cytoplasmic	74	78	0.66
Transmembrane Helix	79	98	0.92
Cytoplasmic	99	109	0.58
Transmembrane Helix	110	131	0.68
Non-Cytoplasmic	132	134	0.62
Transmembrane Helix	135	156	0.56
Cytoplasmic	157	164	0.58
Transmembrane Helix	165	183	0.85
Non-Cytoplasmic	184	189	0.71
Transmembrane Helix	190	212	0.92
Cytoplasmic	213	268	0.89
Transmembrane Helix	269	293	0.90
Non-Cytoplasmic	294	313	0.82
Transmembrane Helix	314	333	0.77
Cytoplasmic	334	362	0.81
Transmembrane Helix	363	383	0.91
Non-Cytoplasmic	384	387	0.80
Transmembrane Helix	388	408	0.89
Cytoplasmic	409	420	0.86
Transmembrane Helix	421	443	0.90
Non-Cytoplasmic	444	449	0.72
Transmembrane Helix	450	468	0.94
Cytoplasmic	469	490	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELSSPNLD SASQKPRIST ENPPPPPPHI SIGVTTGDPA TSPARTVNQI KKITVLPLVF  60
   61 LIFYEVSGGP FGIEDSVKAA GPLLAIVGFI VFPFIWSIPE ALITAEMGTM FPENGGYVVW 120
  121 VTLAMGPYWG FQQGWVKWLS GVIDNALYPI LFLDYLKSGI PILGSGIPRV AAILVLTVAL 180
  181 TYLNYRGLSI VGVAAVLLGV FSILPFVVMS FMSIPKLKPS RWLVVSKKMK GVNWSLYLNT 240
  241 LFWNLNYWDS VSTLTGEVEN PSKTLPRALF YALLLVVFSY IFPVLTGTGA IALDQKLWTD 300
  301 GYFADIGKVI GGVWLGWWIQ AAAATSNMGM FLAEMSSDSF QLLGMAERGM LPEVFAKRSR 360
  361 YRTPWVGILF SASGVIILSW LSFQEIVAAE NLLYCFGMVL EFITFVRLRM KYPAASRPFK 420
  421 IPVGVLGSVL MCIPPTVLIG VIMAFTNLKV ALVSLAAIVI GLVLQPCLKQ VEKKGWLKFS 480
  481 TSSHLPNLME