YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHT19_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.96
Transmembrane Helix	17	39	0.86
Non-Cytoplasmic	40	59	0.83
Transmembrane Helix	60	83	0.87
Cytoplasmic	84	91	0.90
Transmembrane Helix	92	113	0.93
Non-Cytoplasmic	114	122	0.72
Transmembrane Helix	123	142	0.89
Cytoplasmic	143	155	0.82
Transmembrane Helix	156	180	0.86
Non-Cytoplasmic	181	208	0.94
Transmembrane Helix	209	228	0.96
Cytoplasmic	229	296	0.95
Transmembrane Helix	297	318	0.81
Non-Cytoplasmic	319	340	0.87
Transmembrane Helix	341	362	0.90
Cytoplasmic	363	373	0.78
Transmembrane Helix	374	394	0.92
Non-Cytoplasmic	395	404	0.88
Transmembrane Helix	405	427	0.88
Cytoplasmic	428	439	0.80
Transmembrane Helix	440	462	0.87
Non-Cytoplasmic	463	478	0.83
Transmembrane Helix	479	498	0.97
Cytoplasmic	499	532	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPELSLLSAL DAARIQWYHF KAIIVAGMGL FTDAYDLFCI APIMKMISQI YYHKDSIGTA  60
   61 LLSTSYAIAL LGTALGQLIF GYLGDRVGRR KVYGLSLLIM VFSSFGCGFS VCTTRRSCVM 120
  121 VSLGFFRFVL GLGIGGDYPL SATIMSEFAN KRTRGAFIAA VFSMQGLGIL MSSAVTMVVC 180
  181 LAFKNAGEGS SEKTNVAGLE TLAPPESDIA WRLILMIGAL PAALTFYWRM LMPETARYTA 240
  241 LVENNVVQAA KDMQRVMSVS MISQITEDSS SELEQPPSSS SYKLFSRRFL SLHGRDLFAA 300
  301 SANWFLVDVV FYTSNLLLSQ IFNFSNKPLN STNVYDSAFE VAKLAAIVAA CSTIPGYWFT 360
  361 VYFIDKIGRV KIQMMGFFLM AVVYLVAGIP YSWYWSKHEK TNKGFMVLYG LIFFFSNFGP 420
  421 NTTTFIIPAE LFPARFRSTC HGISGAAGKF GAIVGTVGFL WATRHHEEDG FPDVKRVRIA 480
  481 FLILGGVCIA GMIVTYLFTR ETMGRSLEEN EDEIVSTSAG SSPANELLRR QY