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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LRK82_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.88
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLPPRFFS VYSTLIHILA SFLCSSDVRG DFPATRFDLG TLTLSSLKLL GDAHLNNGTI  60
   61 KLTRELSVPT STAGKALYGK PVKFRHPETK SPASFTTYFS FSVTNLNPSS IGGGLAFVIS 120
  121 PDEDYLGSTG GFLGLTEETG SGSGFVAVEF DTLMDVQFKD VNGNHVGLDL NAVVSAAVAD 180
  181 LGNVDIDLKS GNAVNSWITY DGSGRVLTVY VSYSNLKPKS PILSVPLDLD RYVSDSMFVG 240
  241 FSGSTQGSTE IHSVDWWSFS SSFEESSESP PPMPNSPPPS SPSSSITPSL STVRRKTADP 300
  301 SSSCRNKLCK KSPAAVAGVV TAGAFFLALF AGVIIWVYSK KIKYTRKSES LASEIMKSPR 360
  361 EFTYKELKLA TDCFSSSRVI GNGAFGTVYK GILQDSGEII AIKRCSHISQ GNTEFLSELS 420
  421 LIGTLRHRNL LRLQGYCREK GEILLIYDLM PNGSLDKALY ESPTTLPWPH RRKILLGVAS 480
  481 ALAYLHQECE NQIIHRDVKT SNIMLDANFN PKLGDFGLAR QTEHDKSPDA TAAAGTMGYL 540
  541 APEYLLTGRA TEKTDVFSYG AVVLEVCTGR RPITRPEPEP GLRPGLRSSL VDWVWGLYRE 600
  601 GKLLTAVDER LSEFNPEEMS RVMMVGLACS QPDPVTRPTM RSVVQILVGE ADVPEVPIAK 660
  661 PSSSMSFSTS ELLLTLQDSV SDCNEVLAPI STTSCSSSEH DIFIVGKDRS V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle