YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RER4_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.23
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL  60
   61 SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR NRNEAMLLLK ESGIELESLP 120
  121 KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI 180
  181 FTKTAAEYER RRENFFNELE VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF 240
  241 FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD 300
  301 QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA 360
  361 VRTGNTFLGS LLWVDYARLI GIQKSH

Type	Start	End	Confidence
Signal Peptide	1	18	0.44
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	386	0.69